Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20801
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 2   FFIEINNIHDFFMVSSFFDFLNAESHDHLLATK 100
           F  ++ NI D+++V    D     SHD LL  K
Sbjct: 280 FLHKMKNIIDYYLVLENTDHTKQLSHDVLLRAK 312


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 230 LTLIYLFYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMAYITFAI 367
           L  + +F+ L  +++P        +  YL++ ++ VT+   +T A+
Sbjct: 275 LLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAV 320


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 230 LTLIYLFYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMAYITFAI 367
           L  +++F+ L  +++P        +  YLI+ ++ V+I   +T  +
Sbjct: 283 LISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 230 LTLIYLFYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMAYITFAI 367
           L  +++F+ L  +++P        +  YLI+ ++ V+I   +T  +
Sbjct: 283 LISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 230 LTLIYLFYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMAYITFAI 367
           L  + +F  L  K+LP        I  YL++  +  T+   +T  I
Sbjct: 272 LLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVII 317


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 212 LCTGNALTLIYLFYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMAYITFAI 367
           LC  N L    +F+ L  +++P        +  YL++ ++ V +   IT  I
Sbjct: 269 LCI-NILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMILVGLSVVITIVI 319


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 592 EGENNYIY---IFRSIIFQCDVDI 654
           E E NY     I+ ++ + CDVD+
Sbjct: 113 EAEENYNLLEDIYETLSYDCDVDV 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,019
Number of Sequences: 438
Number of extensions: 4789
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)