Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20801
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ...    28   5.7  
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to...    28   7.6  
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ...    27   10.0 
At3g58670.1 68416.m06539 expressed protein                             27   10.0 
At1g09960.1 68414.m01122 sucrose transporter / sucrose-proton sy...    27   10.0 
At1g01560.1 68414.m00073 mitogen-activated protein kinase, putat...    27   10.0 

>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
            contains similarity to glucan synthases
          Length = 1973

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 236  LIYLFYYLFKKVLPYHKHFTLKITNYLIYGLMHVTIMA 349
            ++ L +++++  L YH   T   TN ++Y L  V I+A
Sbjct: 1792 ILSLRFFVYQYGLVYHLDITQSNTNIIVYALSWVVILA 1829


>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 409

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 304 NKLFNLWSDACDNNGVHNIRNLSARRWNTIIIKK--NLMKTYFEIHTMPGGRGI 459
           N +  + +D C ++G H + ++ +   N +I K+   +M  YF    + G  G+
Sbjct: 243 NAMIAIAADHCHDSGSHTVYHVGSSNQNPVIYKQIYEMMSRYFMKSPLVGRNGM 296


>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 659

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 62  LNAESHDHLLATKGYYGLLYAIC 130
           +N   HDH +A     GL+Y++C
Sbjct: 293 ININRHDHRVARTNLLGLVYSVC 315


>At3g58670.1 68416.m06539 expressed protein
          Length = 242

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 269 VLPYHKHFTLKITNYLIYGLMHV 337
           ++P H H  + + + L+YG MHV
Sbjct: 94  IIPLHNHPGMTVLSKLVYGSMHV 116


>At1g09960.1 68414.m01122 sucrose transporter / sucrose-proton
           symporter (SUT4) nearly identical to sucrose transporter
           SUT4 [Arabidopsis thaliana] GI:9957053
          Length = 510

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 447 GAGDI*ELYNLMLFICFLSLIIT 515
           GAG +  + N+++ ICFL +IIT
Sbjct: 365 GAGFVWGISNILMAICFLGMIIT 387


>At1g01560.1 68414.m00073 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK11) similar to MAP kinase 5
           GI:4239889 from [Zea mays]; mitogen-activated protein
           kinase (MAPK)(AtMPK11), PMID:12119167
          Length = 275

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 228 HSHLFIYFIIYLKKYCHITNILH 296
           HS  F+Y ++   KY H  N+LH
Sbjct: 142 HSRFFLYQLLRGLKYVHSANVLH 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,927
Number of Sequences: 28952
Number of extensions: 312269
Number of successful extensions: 847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)