Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20800
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    99   3e-22
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    90   3e-19
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   1.7  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    26   3.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   3.9  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =   99 bits (238), Expect = 3e-22
 Identities = 46/83 (55%), Positives = 62/83 (74%)
 Frame = +3

Query: 258 KSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILG 437
           K+++ GKGVL A+ N+N +IAP + KANL+VT Q+  DE +LKLDGTENKSKLGANAILG
Sbjct: 54  KTKWGGKGVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILG 113

Query: 438 VSLXXXXXXXXXXNVPLYKHLAD 506
           VS+           +PL+K++A+
Sbjct: 114 VSMAICRAGAAQKKLPLWKYIAE 136



 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 37/51 (72%), Positives = 43/51 (84%)
 Frame = +1

Query: 100 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRD 252
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRD 51



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +2

Query: 506 FAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 622
           F      VLPVP+FNV+NGGSHAG  LA QEFMI PTGA
Sbjct: 138 FGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGA 176


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 39/84 (46%), Positives = 59/84 (70%)
 Frame = +3

Query: 258 KSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILG 437
           K+++ GKGV  A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+G
Sbjct: 55  KNKWGGKGVTIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVG 114

Query: 438 VSLXXXXXXXXXXNVPLYKHLADL 509
           VS+           +PLY+++  L
Sbjct: 115 VSMAVARAAAAFLKIPLYEYIGKL 138



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 35/52 (67%), Positives = 41/52 (78%)
 Frame = +1

Query: 106 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDKSR 261
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRD  +
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDK 55



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 476 KCSAVQALG*FAGNNDI-VLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 622
           K    + +G  AG+     +PVP+FNV+NGG HAG  LA QEFMI P  A
Sbjct: 128 KIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKA 177


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 443 PSCC*GWCC-QEKCSAVQALG*FAGNNDIVL 532
           PSCC G CC +E C      G +  N  + +
Sbjct: 490 PSCCGGHCCKEESCRTENCKGAYPANATVTV 520


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 615 VGKIMNSCMASLFPACDPPLITLKAGTGRTISL 517
           +G+ +N  +  LFP+CD  LI      G TI L
Sbjct: 204 LGEFLNKRLPDLFPSCDKFLIVKPVIHGITIFL 236


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 407 FVLSTIQLKHEFINLSLLGYFKVGFG 330
           F +S+I+ KH++IN+    Y  +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,433
Number of Sequences: 5004
Number of extensions: 44546
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)