Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20800
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 92 4e-19
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 79 2e-15
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 78 7e-15
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 77 2e-14
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 54 1e-07
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 27 9.2
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 91.9 bits (218), Expect = 4e-19
Identities = 45/81 (55%), Positives = 57/81 (70%)
Frame = +3
Query: 267 YHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSL 446
Y GKGVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSKLGANAILGVSL
Sbjct: 106 YGGKGVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSL 163
Query: 447 XXXXXXXXXXNVPLYKHLADL 509
VPLYKH+ +L
Sbjct: 164 SVCRAGAGAKEVPLYKHIQEL 184
Score = 77.4 bits (182), Expect = 9e-15
Identities = 39/51 (76%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Frame = +1
Query: 103 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRD 252
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRD 100
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = +2
Query: 509 AGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGAS 625
AG ++V+PVPAFNVINGGSHAGN LAMQEFM+ P GAS
Sbjct: 185 AGTKELVMPVPAFNVINGGSHAGNNLAMQEFMLLPVGAS 223
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 79.4 bits (187), Expect = 2e-15
Identities = 40/50 (80%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRD 252
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRD 54
Score = 62.5 bits (145), Expect = 3e-10
Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +3
Query: 261 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGA 422
S+Y GKGVL A+ N+N +I P L + T+Q ID M+ +LDGT+N K KLGA
Sbjct: 57 SDYLGKGVLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGA 114
Query: 423 NAILGVSLXXXXXXXXXXNVPLYK 494
NAIL VSL +PLY+
Sbjct: 115 NAILAVSLALCKAGAIIKKIPLYQ 138
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 77.8 bits (183), Expect = 7e-15
Identities = 40/50 (80%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRD 252
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRD 54
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/52 (69%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +2
Query: 473 EKCSAVQALG*FAGNNDIVLPVPAFNVINGGSHAGNKLAMQ-EFMIFPTGAS 625
+K Q + AGN +VLPVPAFNVINGGSHAGNKLAMQ EFMI PTGA+
Sbjct: 132 KKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMILPTGAA 183
Score = 70.1 bits (164), Expect = 1e-12
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Frame = +3
Query: 261 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGA 422
S+Y GKGV A+ N+N +IAP L + T Q E+D M++ LDGT+N K KLGA
Sbjct: 57 SDYLGKGVSKAVDNVNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGA 114
Query: 423 NAILGVSLXXXXXXXXXXNVPLYKHLADL 509
NAIL VSL +PLY+H+A+L
Sbjct: 115 NAILAVSLAICKAGAIIKKIPLYQHIANL 143
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/54 (70%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Frame = +1
Query: 94 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRD 252
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRD 54
Score = 64.5 bits (150), Expect = 7e-11
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Frame = +3
Query: 261 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGA 422
S+Y GKGVL A+ N+N +I P L + T+Q +ID M+ +LDGT N K KLGA
Sbjct: 57 SDYLGKGVLKAVSNVNTIIGPAL--IGKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGA 114
Query: 423 NAILGVSLXXXXXXXXXXNVPLY---KHLADL 509
NAIL VSL +PLY +H+A+L
Sbjct: 115 NAILAVSLAVCKAGAMVKKIPLYQKLQHIANL 146
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +2
Query: 488 VQALG*FAGNNDIVLPVPAFNVINGGSHAGNKLAMQ 595
+Q + AGN +VLPVPAFNVINGGSHAGNKLAMQ
Sbjct: 140 LQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQ 175
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/85 (30%), Positives = 49/85 (57%)
Frame = +3
Query: 258 KSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILG 437
K + + V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G N++L
Sbjct: 98 KRKLLARAVADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLA 155
Query: 438 VSLXXXXXXXXXXNVPLYKHLADLL 512
VS+ VPLYKH+A+L+
Sbjct: 156 VSIAACKAGAAEKEVPLYKHIAELV 180
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +2
Query: 446 SCC*GWCCQEKCSAVQALG*FAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 622
+ C +++ + + G + LP+PA VINGG+HAGN L +QE MI P GA
Sbjct: 159 AACKAGAAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQEIMILPVGA 217
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 103 VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDKSRVNIMAR 279
VI S++ARQI D RG P VEV L T + RA+ + + A +RD + ++AR
Sbjct: 46 VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLAR 104
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 624 DAPVGKIMNSCMASLFPACDPPLITLKA 541
DA + ++ N C+ LFPA D L +KA
Sbjct: 375 DAEINEMANDCLKKLFPAAD-DLTAIKA 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,892
Number of Sequences: 37544
Number of extensions: 293192
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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