Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20800
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   79   2e-15
SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)               61   6e-10
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             36   0.020
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   4.1  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   7.1  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         27   9.4  

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 34/39 (87%), Positives = 37/39 (94%)
 Frame = +2

Query: 509 AGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGAS 625
           AGNN ++LPVPAFNVINGGSHAGNKLAMQEFM+ PTGAS
Sbjct: 36  AGNNQVILPVPAFNVINGGSHAGNKLAMQEFMLLPTGAS 74


>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = +3

Query: 261 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENK 407
           S++ GKGV  A+ N+N +I P L   N++VT Q +ID +ML+LDGTENK
Sbjct: 66  SKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQEDIDNMMLQLDGTENK 114



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +1

Query: 184 GLFRAAVPSGASTGVHEALELRDKSRVNIMAR 279
           G FRAAVPSGASTG++EALELRDK     + +
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGK 71


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +2

Query: 548 NVINGGSHAGNKLAMQEFMIFPTGA 622
           N++NGG+HA + + +QEFMI P GA
Sbjct: 2   NILNGGAHADSDVDIQEFMIAPIGA 26


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 288 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 410
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 288 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 434
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 431 DSISTQFGFVLSTIQLKHEFINLSLLGYFKVGFGKFRSNEFID 303
           + + T F      ++ +H F    + GY + GF KFRS + +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELD 675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,070
Number of Sequences: 59808
Number of extensions: 328615
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)