Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20798
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0215 + 14944039-14944227,14944444-14944905,14945513-14945713 35 0.074
10_06_0043 - 10026817-10027869 33 0.30
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916... 33 0.30
01_05_0405 - 21866058-21866255,21866711-21867172,21867389-21867577 31 0.69
10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335 29 4.9
10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317 29 4.9
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 29 4.9
05_04_0213 + 19109369-19109581,19109803-19109873,19110175-191102... 29 4.9
02_03_0020 - 13996688-13996785,13997168-13997217,13997516-139976... 29 4.9
01_01_0740 - 5756491-5757054,5757247-5757407,5757580-5757607 29 4.9
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054 28 6.4
03_05_0316 - 23045214-23045261,23045322-23045400,23045548-230457... 28 6.4
>11_04_0215 + 14944039-14944227,14944444-14944905,14945513-14945713
Length = 283
Score = 34.7 bits (76), Expect = 0.074
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 141 PEIPVIKEEPLPISDKMDLIPDVPFPELKPETETSSDVRWPIRHRMIKYNSPQPRVNVS 317
PEI +I E+PL + K D + F L+PE E P + R Y + + +N S
Sbjct: 145 PEIEIIHEDPLHMESKPDSTVESSFQSLEPEEEEIHSPEIPFQFRGDLYENYENTLNYS 203
>10_06_0043 - 10026817-10027869
Length = 350
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 141 PEIPVIKEEPLPISDKMDLIPDVPFPELKPETETSSDVRWPIRHRMIKYNSPQPRVNVS 317
PEI +I E PL + + D + F L+PE E + P + R Y + + +N S
Sbjct: 217 PEIEIIHEYPLHVESEPDSTVESSFQSLEPEEEEIHPPKIPFQFRGDLYENYENTLNYS 275
>10_05_0101 -
9167383-9167679,9167883-9167961,9168161-9168326,
9169201-9169299,9169969-9171361
Length = 677
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 141 PEIPVIKEEPLPISDKMDLIPDVPFPELKPETETSSDVRWPIRHRMIKYNSPQPRVNVSE 320
PE+ +I EEPL + + D + F L+PE E P++ R Y +N S
Sbjct: 218 PEVEIIHEEPLHMESEPDSTAESSFQLLQPEEEEIHPPEIPLQFRDDLYKDYGNTLNYSS 277
Query: 321 HI 326
I
Sbjct: 278 KI 279
>01_05_0405 - 21866058-21866255,21866711-21867172,21867389-21867577
Length = 282
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 141 PEIPVIKEEPLPISDKMDLIPDVPFPELKPETETSSDVRWPIRHR 275
PEI +I EEPL + + D + F LKPE E P + R
Sbjct: 145 PEIEIIHEEPLHVELEPDSTAESSFQLLKPEEEEIHPSEIPFQFR 189
>10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335
Length = 227
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 464 RSKHTKLINTPYMWYSKLKFIVID 393
+ K K IN P WY +++FI D
Sbjct: 96 KDKRAKFINVPIRWYDEMEFIFQD 119
>10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317
Length = 250
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 464 RSKHTKLINTPYMWYSKLKFIVID 393
+ K K IN P WY +++FI D
Sbjct: 65 KDKRAKFINVPIRWYDEMEFIFQD 88
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 464 RSKHTKLINTPYMWYSKLKFIVID 393
+ K K IN P WY +++FI D
Sbjct: 631 KDKRAKFINVPIRWYDEMEFIFQD 654
>05_04_0213 +
19109369-19109581,19109803-19109873,19110175-19110229,
19110441-19110626
Length = 174
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 211 PFQN*NLKLKHRRMYGGQLDIV*SNIIVHNRGSTC 315
P++N L H + G QL ++ S+ IV++ G TC
Sbjct: 61 PYENPPLPSNHNPIGGAQLPLLLSSSIVNHNGLTC 95
>02_03_0020 -
13996688-13996785,13997168-13997217,13997516-13997619,
13997664-13997764,13998436-13998505,13998604-13999422,
14000894-14001052
Length = 466
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 144 EIPVIKEEPLPISDKMDLIPDVPFPELKPETETSSDVRWPIRHR 275
E+ +I E+PL + + D + F L+PE E P R R
Sbjct: 136 EVEIIHEDPLHVESEPDSTAESSFELLQPEEEEIHPQEIPFRFR 179
>01_01_0740 - 5756491-5757054,5757247-5757407,5757580-5757607
Length = 250
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 464 RSKHTKLINTPYMWYSKLKFIVID 393
+ K K IN P WY +++FI D
Sbjct: 65 KDKRAKFINVPIRWYDEMEFIFQD 88
>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
Length = 995
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 275 TMSNWPPYIRRCFSFRF*FWKGY 207
T N PPY+R CF++ F KG+
Sbjct: 290 TYKNMPPYLRLCFAYCAIFPKGH 312
>03_05_0316 -
23045214-23045261,23045322-23045400,23045548-23045707,
23046937-23047006,23047439-23048017
Length = 311
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 141 PEIPVIKEEPLPISDKMDLIPDVPFPELKPETETSSDVRWPIRHRMIKYNSPQPRVNVS 317
PE+ +I E+PL + + + + F L+PE E P + R+ Y +N S
Sbjct: 121 PEVEIIYEDPLHVESEPNSTAESLFQLLEPEEEEIHPSEIPFQFRVGLYEDYGNTLNYS 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,729,786
Number of Sequences: 37544
Number of extensions: 312783
Number of successful extensions: 761
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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