Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20798
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2627| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_50622| Best HMM Match : Omega-toxin (HMM E-Value=3.1)               29   5.0  
SB_26356| Best HMM Match : Pkinase (HMM E-Value=0.00044)               29   5.0  
SB_39327| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-15)                 29   5.0  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_28009| Best HMM Match : Zfx_Zfy_act (HMM E-Value=7.3)               28   8.7  
SB_25251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_2627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/91 (27%), Positives = 43/91 (47%)
 Frame = +3

Query: 267 RHRMIKYNSPQPRVNVSEHILFITTSYCDVTSNLVRPYLIYNINYNEFQFRIPHIWRIYK 446
           R R +   S Q R  +S+   FI T    VTS L  P+L +  ++ +F     +I+ +  
Sbjct: 116 RERYLSVRSRQRR-QLSQKRTFIITIAIWVTS-LTFPFLYFATSFYKFSLVFANIFILGT 173

Query: 447 FSVLASVKLRLYYIR*DRVLYTITKLYRQYT 539
             ++A   +R+Y     RV  T+ +  R+ T
Sbjct: 174 LGIIAFAYVRIYQRLHARVANTVREGTRRET 204


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 150 PVIKEEPLPISDKMDLIPDVPFPELKPETETSSDVRWP 263
           P  K+EPLP   +   + D P PE+ P   +S +   P
Sbjct: 744 PPNKDEPLPKVQENSKVGDTPAPEIPPRNYSSPEFAEP 781


>SB_50622| Best HMM Match : Omega-toxin (HMM E-Value=3.1)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +1

Query: 358 HRT*FDHTLYTISITMNFNL 417
           HR+  DHT++T+++ +NFN+
Sbjct: 117 HRSRRDHTVFTLNVKINFNI 136


>SB_26356| Best HMM Match : Pkinase (HMM E-Value=0.00044)
          Length = 634

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 337 VINKICSDTLTRGCGLLYLIIRCLIGHRT-SDDVSVS 230
           V++K+  + +  G  LLY++I   +GH   SDD+  S
Sbjct: 151 VVSKVFENAVEAGKSLLYVLIDITLGHNAISDDIGKS 187


>SB_39327| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-15)
          Length = 304

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 226 FNSGKGTSGIKSILSEIGRGSSFITG 149
           FN     SG+K+++S+ G+ +SFITG
Sbjct: 70  FNGLLFLSGLKNVISDPGQANSFITG 95


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 289 IVHNRGSTCLNIFYLLQ--LRTAM*HRT*FDHTLYTI 393
           I H RG  C N FY  Q  L+  M  R  FDH  Y++
Sbjct: 143 ISHERGYFCPNDFYCAQINLKPFMADRRYFDHFFYSL 179


>SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 689 TFSESIEKPQKTKL*SIYNFV*HLFHKGQ*RSDRRHRN*YPCNN-GTNLSHRILPI 525
           TF ++    QK    S YN+  H       +   R RN   C N  TN+ HR+L +
Sbjct: 108 TFDQAAPPYQKALDESGYNYTLHYEPNTTNKRKNRQRNNIICKNTSTNIGHRLLSL 163


>SB_28009| Best HMM Match : Zfx_Zfy_act (HMM E-Value=7.3)
          Length = 677

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 302 RLWTIIFDHTMSNWPPYIRR 243
           + +TII+DH++  WP  IR+
Sbjct: 14  KTFTIIYDHSIERWPSSIRQ 33


>SB_25251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 302 RLWTIIFDHTMSNWPPYIRR 243
           + +TII+DH++  WP  IR+
Sbjct: 14  KTFTIIYDHSIERWPSSIRQ 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,439,768
Number of Sequences: 59808
Number of extensions: 408923
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)