Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20798
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    28   5.4  
At3g11890.2 68416.m01458 expressed protein                             28   5.4  

>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 141 PEIPVIKEEPLPISDKMDLIP--DVP-FPEL-KPETETSSDVRWPIRHRMIKYNSPQ 299
           PE+P + E P P   K+  IP  ++P FPE+ KPE     ++  P   ++ +   P+
Sbjct: 87  PELPKVPEIPKPEETKLPDIPKLELPKFPEIPKPELPKMPEIPKPELPKVPEIQKPE 143



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 141 PEIPVIKEEPLPISDKMDLIPDVPFPELK--PETETSSDVRWP 263
           PE+P + E P P   ++  IP++P PEL   PE     + + P
Sbjct: 65  PELPKLPEFPKP---ELPKIPEIPKPELPKVPEIPKPEETKLP 104


>At3g11890.2 68416.m01458 expressed protein
          Length = 527

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 198 IPDVPFPE----LKPETETSSDVRWPIRHRMIKYNSPQPRVNVSEH 323
           IP +P PE    LKP T  S      + H+    ++  P ++V+EH
Sbjct: 305 IPSLPVPEHYSLLKPSTSQSQAEVRTLTHKATHVHTAMPSLSVTEH 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,225,426
Number of Sequences: 28952
Number of extensions: 278208
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)