Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20797
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    25   0.84 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.9  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 556 DCGNEPGIRHQRVSSICCALFGDFVLKIPYSVTMRQLFMLTSAL 425
           +C NEP +RH  +       F   +L   Y+ T  ++ +L S L
Sbjct: 86  ECDNEPKLRHYLIFIFVNVFFWVIILMSNYAFT--RIILLKSVL 127


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +1

Query: 547 FHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFR 654
           FH+ +  +L +  ++ +   +N+W    I L+ +++
Sbjct: 100 FHSFMTSVLFSQVASRWPLFLNEWTKIEINLLKHYQ 135


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 248 YALMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLL 388
           Y  +K D +L   V   +KN +  ++    W N   +V   DN  +L
Sbjct: 154 YLEIKIDEHLYPVVALVVKNLIKPTILGADWLNEQRAVIDFDNNEIL 200


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/36 (22%), Positives = 15/36 (41%)
 Frame = +2

Query: 434 SQHEELSHRDGVWNLQNEVTKERTANATYALMTNPW 541
           ++ EEL+    +W    +   +      Y  +TN W
Sbjct: 274 TEDEELNKTKPIWTRNADDISQEEYGEFYKSLTNDW 309


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,041
Number of Sequences: 336
Number of extensions: 4230
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)