Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20797
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...   140   1e-34
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    28   1.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   2.1  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   6.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score =  140 bits (340), Expect = 1e-34
 Identities = 64/87 (73%), Positives = 76/87 (87%)
 Frame = +2

Query: 254  LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
            LMKHDVNLGRAVFW+I+NRLPRS+TT++WE++F SVYSKDNPNLLF+M GFE RILPK R
Sbjct: 1167 LMKHDVNLGRAVFWEIRNRLPRSLTTLEWEDTFPSVYSKDNPNLLFSMTGFEVRILPKIR 1226

Query: 434  SQHEELSHRDGVWNLQNEVTKERTANA 514
             Q+EE S +DGVWNL +  TK+RTA A
Sbjct: 1227 -QNEEFSLKDGVWNLTDNRTKQRTAQA 1252



 Score =  129 bits (312), Expect = 4e-31
 Identities = 55/86 (63%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3    ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
            A+E+AGP   PNDFL ++D+ TET+HPIRLY RYID+++I FRF+ EE+RDLIQR+L E+
Sbjct: 1081 ATEIAGPADAPNDFLHFKDQATETSHPIRLYTRYIDKVYIMFRFTDEESRDLIQRFLNEN 1140

Query: 183  PDPNNENIVGYN--NKKCWPRDARMR 254
            PDP N N+V Y+   K CWPRDARMR
Sbjct: 1141 PDPTNSNVVNYSKGKKNCWPRDARMR 1166



 Score =  120 bits (288), Expect = 3e-28
 Identities = 53/78 (67%), Positives = 68/78 (87%)
 Frame = +1

Query: 505  SKCYLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 684
            ++ ++RV ++ + +F NR+RQILM+SGSTTFTKI NKWNTALI LMTY+REA ++T ELL
Sbjct: 1250 AQAFIRVTEDGINQFGNRIRQILMSSGSTTFTKIANKWNTALIALMTYYREAAISTPELL 1309

Query: 685  DLLVKCENKIQTRIKIGL 738
            DLLVKCE+KIQTR+KI L
Sbjct: 1310 DLLVKCESKIQTRVKISL 1327


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 470 WNLQNEVTKERTANATYALMTNPWLVSTIVSDKSLWLPDQRPLPKSSINGI 622
           W+   +  K +TA+ T + +T P      ++DK++ LP+Q PL   S   I
Sbjct: 147 WSTAYQKQKRKTASYTNSPVTPP------INDKNILLPEQSPLSNFSTTKI 191


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 527 MTNPWLVSTIVSDKSLWLPDQRPLPKSSINGIL 625
           +T PWL +T  +++  WLP Q+ + +    G+L
Sbjct: 38  LTTPWLQTTPSANRPTWLPLQQHMHQLRHTGLL 70


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +2

Query: 344 NSFVSVYSKDNPNLLFNMAGFECRILP----KCRSQHEELSHRDGVWNLQNEVTKERTAN 511
           ++ VS+Y+ DN  +  ++    C I P     C +   + S  D +  L+NE+  +    
Sbjct: 76  DTIVSLYAVDNEEVKKDVISCSCTIYPLVFLHCCTSPNDSSTWDTLTKLKNEIINDFDKG 135

Query: 512 ATYALMTNPWLVSTIVSDKSLWLPDQRPLPKSSIN 616
               L++    +S ++  +   + D R + KS ++
Sbjct: 136 NKPLLISCIKFISCVILTQVPGIRDPRLVTKSDVS 170


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 156 LIQRYLTEHPDP 191
           +IQRYL  HPDP
Sbjct: 440 IIQRYLNAHPDP 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,424
Number of Sequences: 5004
Number of extensions: 68885
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)