Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20797
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...   159   2e-39
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...   159   2e-39
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223...    29   5.1  
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    28   8.9  

>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
            3363820-3364098,3364189-3364386,3364475-3365110,
            3365209-3365463,3365579-3365685,3365770-3369566,
            3369677-3370166,3370918-3371308,3371481-3371573,
            3371687-3371810,3372544-3372791
          Length = 2380

 Score =  159 bits (387), Expect = 2e-39
 Identities = 67/84 (79%), Positives = 76/84 (90%)
 Frame = +3

Query: 3    ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
            ASE+AGPP +PN+FL+Y D + ET HPIRLY RYID++HI FRF+ EEARDLIQRYLTEH
Sbjct: 1072 ASEIAGPPTMPNEFLTYADTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRYLTEH 1131

Query: 183  PDPNNENIVGYNNKKCWPRDARMR 254
            PDPNNEN+VGYNNKKCWPRDARMR
Sbjct: 1132 PDPNNENMVGYNNKKCWPRDARMR 1155



 Score =  150 bits (364), Expect = 1e-36
 Identities = 69/88 (78%), Positives = 77/88 (87%), Gaps = 1/88 (1%)
 Frame = +2

Query: 254  LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
            LMKHDVNLGR+VFWD+KNRLPRS+TT++WENSFVSVYSKDNPNLLF+M GFE RILPK R
Sbjct: 1156 LMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIR 1215

Query: 434  SQHEELSH-RDGVWNLQNEVTKERTANA 514
               E  S+ +DGVWNLQNE TKERTA A
Sbjct: 1216 MTQEAFSNTKDGVWNLQNEQTKERTAIA 1243



 Score =  138 bits (333), Expect = 6e-33
 Identities = 66/75 (88%), Positives = 70/75 (93%)
 Frame = +1

Query: 514  YLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLL 693
            +LRVDDE +  F NRVRQILM+SGSTTFTKIVNKWNTALIGLMTYFREA V+TQELLDLL
Sbjct: 1244 FLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLL 1303

Query: 694  VKCENKIQTRIKIGL 738
            VKCENKIQTRIKIGL
Sbjct: 1304 VKCENKIQTRIKIGL 1318


>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
            3645328-3645525,3645614-3646249,3646352-3646606,
            3646718-3646824,3646909-3650705,3650816-3651305,
            3652043-3652433,3652621-3652713,3652818-3652941,
            3653871-3654118
          Length = 2350

 Score =  159 bits (386), Expect = 2e-39
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +3

Query: 3    ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
            ASE+AGPP +PN+FL+Y D + ET HPIRLY RY+D++HI FRF+ EEARDLIQRYLTEH
Sbjct: 1072 ASEIAGPPTMPNEFLTYADTKVETRHPIRLYSRYVDKVHIMFRFTHEEARDLIQRYLTEH 1131

Query: 183  PDPNNENIVGYNNKKCWPRDARMR 254
            PDPNNEN+VGYNNKKCWPRDARMR
Sbjct: 1132 PDPNNENMVGYNNKKCWPRDARMR 1155



 Score =  150 bits (364), Expect = 1e-36
 Identities = 69/88 (78%), Positives = 77/88 (87%), Gaps = 1/88 (1%)
 Frame = +2

Query: 254  LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
            LMKHDVNLGR+VFWD+KNRLPRS+TT++WENSFVSVYSKDNPNLLF+M GFE RILPK R
Sbjct: 1156 LMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIR 1215

Query: 434  SQHEELSH-RDGVWNLQNEVTKERTANA 514
               E  S+ +DGVWNLQNE TKERTA A
Sbjct: 1216 MTQEAFSNTKDGVWNLQNEQTKERTAIA 1243



 Score =  138 bits (333), Expect = 6e-33
 Identities = 66/75 (88%), Positives = 70/75 (93%)
 Frame = +1

Query: 514  YLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLL 693
            +LRVDDE +  F NRVRQILM+SGSTTFTKIVNKWNTALIGLMTYFREA V+TQELLDLL
Sbjct: 1244 FLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLL 1303

Query: 694  VKCENKIQTRIKIGL 738
            VKCENKIQTRIKIGL
Sbjct: 1304 VKCENKIQTRIKIGL 1318


>07_03_0068 -
           13021090-13021197,13021319-13021354,13022245-13022322,
           13022412-13022514,13022732-13022817,13023036-13023090,
           13023186-13023250,13023997-13024086,13024415-13024530,
           13024701-13024710
          Length = 248

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 245 SYALMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKD 373
           S  L +  +NL  A F D++ +LP + T   W N+     ++D
Sbjct: 197 STILQESYMNLSDATFKDLRRKLPVTRTLFPWHNTLALSLTRD 239


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 200 EHCWLQ*QKVLAKGCSYALMKHDV-NLGRAV 289
           EHCWL  Q+  + GC+ A +  ++ N+G+ +
Sbjct: 350 EHCWLVCQRRASHGCTTATIDDELTNIGQQI 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,227,168
Number of Sequences: 37544
Number of extensions: 413569
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)