Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20797
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40492| Best HMM Match : PROCN (HMM E-Value=0) 172 3e-43
SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001) 32 0.42
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_16523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23) 29 3.9
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 28 6.9
SB_40429| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036) 28 6.9
SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
Length = 1784
Score = 172 bits (418), Expect = 3e-43
Identities = 75/84 (89%), Positives = 80/84 (95%)
Frame = +3
Query: 3 ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
ASEMAGPPQ+PNDFL++QD +TE HPIRLY RYIDRIHIFFRFSAE+ARDLIQRYLTEH
Sbjct: 1025 ASEMAGPPQVPNDFLTFQDVETEGRHPIRLYSRYIDRIHIFFRFSAEDARDLIQRYLTEH 1084
Query: 183 PDPNNENIVGYNNKKCWPRDARMR 254
PDPNNENIVGYNNKKCWPRDARMR
Sbjct: 1085 PDPNNENIVGYNNKKCWPRDARMR 1108
Score = 170 bits (414), Expect = 9e-43
Identities = 75/85 (88%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
LMKHDVNLGRAVFWDIKNRLPRS++T+QWENSFVSVYSKDNPNLLFNM GFE RILPKCR
Sbjct: 1109 LMKHDVNLGRAVFWDIKNRLPRSISTLQWENSFVSVYSKDNPNLLFNMCGFESRILPKCR 1168
Query: 434 SQHEELSHRDGVWNLQNEVTKERTA 508
+ EE +HRDGVWNLQNEVTKERTA
Sbjct: 1169 TTFEEFTHRDGVWNLQNEVTKERTA 1193
Score = 151 bits (366), Expect = 6e-37
Identities = 71/78 (91%), Positives = 76/78 (97%)
Frame = +1
Query: 505 SKCYLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 684
++C+LRVDDES +RFHNRVRQILMASGSTTFTKIVNKWNTALIGL TYFREAVVNTQELL
Sbjct: 1193 AQCFLRVDDESQSRFHNRVRQILMASGSTTFTKIVNKWNTALIGLTTYFREAVVNTQELL 1252
Query: 685 DLLVKCENKIQTRIKIGL 738
DLLVKC+NKIQTRIKIGL
Sbjct: 1253 DLLVKCDNKIQTRIKIGL 1270
>SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)
Length = 534
Score = 32.3 bits (70), Expect = 0.42
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 535 SLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKI 714
+L F+N Q+ S F+ V++ ++ + + TY E V+ + LLD KCE+K+
Sbjct: 270 NLGEFYNPPTQLPAFGMSDHFS--VDRVQSSPLAMRTYLEE--VDVKSLLDCKTKCEDKL 325
Query: 715 Q---TRIKIGL 738
Q T +K GL
Sbjct: 326 QMLKTIVKTGL 336
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 SEMAGPPQLPNDFLSYQDRQTETAHPI 86
S + PQL +D +SY+DR HP+
Sbjct: 1442 STLEAQPQLRDDVISYEDRLPSNTHPL 1468
>SB_16523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = -1
Query: 351 KLFSHCIVVTERGRRFFMSQNTARPRLTSCFINAYEHPLASTFCYCNQQCS 199
K +S C V E + F +A LT F N P S F CNQ S
Sbjct: 109 KHYSACTVYRELIQCFKSKALSAHDHLTEAFYNVTVMPAFSLFLICNQPLS 159
>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
Length = 932
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 701 HFTSKSRSSCVLTTASRKYVIRPIRAVFHL 612
HFT+ S ++CVLTT S + +R +F L
Sbjct: 387 HFTATSANNCVLTTVSGTKPLTRLRFMFFL 416
>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = -1
Query: 330 VVTERGRRFFMSQNTARPRLTSCFINAYEHPLASTFCYCNQQCSHCWD 187
++ E G+ S PR+T C CYC+ QC D
Sbjct: 212 LLAESGKNLHNSSGNLDPRITVCETKLSCQNNLELICYCDHQCEQFVD 259
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 323 LNAVDDSLCPRILHAQD*HRASLTHTSIPWPALFVIVTNNVLIVGIRMLCK-VALNQ 156
L AVD SL ++ + HR + P + + NN L G+ +L K ALN+
Sbjct: 290 LKAVDTSLAMEVMARAEQHRTVVPSVISPGAFVQLAADNNDLAAGVPLLWKTTALNE 346
>SB_40429| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036)
Length = 311
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 631 IGLMTYFREAVVNTQELLDLLVKCENKIQ---TRIKIGL 738
+ + TY E V+ + LLD KCE+K+Q T +K GL
Sbjct: 227 LAMRTYLEE--VDVKSLLDCKTKCEDKLQMLETIVKTGL 263
>SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 631 IGLMTYFREAVVNTQELLDLLVKCENKIQ---TRIKIGL 738
+ + TY E V+ + LLD KCE+K+Q T +K GL
Sbjct: 281 LAMRTYLEE--VDVKSLLDCKTKCEDKLQMLKTIVKTGL 317
>SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1400
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +3
Query: 12 MAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEHPDP 191
MA PP + +S R +RL ID + ++ + + + +LT+H
Sbjct: 629 MAAPPAIVEKNISRVARIPVVVSNVRLLASKIDELECVSSTNSADVICVTKTWLTDHIPD 688
Query: 192 NNENIVGY 215
++ N+ GY
Sbjct: 689 SSVNLSGY 696
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,076,784
Number of Sequences: 59808
Number of extensions: 516896
Number of successful extensions: 1543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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