Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20797
(738 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processin... 177 3e-44
AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8 pr... 177 3e-44
AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein. 177 3e-44
BT006755-1|AAP35401.1| 486|Homo sapiens Sec23-interacting prote... 31 5.7
BC063800-1|AAH63800.1| 1000|Homo sapiens SEC23 interacting prote... 31 5.7
AB019435-1|BAA77392.1| 1000|Homo sapiens phospholipase protein. 31 5.7
>BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processing
factor 8 homolog (S. cerevisiae) protein.
Length = 2335
Score = 177 bits (431), Expect = 3e-44
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = +2
Query: 254 LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
LMKHDVNLGRAVFWDIKNRLPRSVTT+QWENSFVSVYSKDNPNLLFNM GFECRILPKCR
Sbjct: 1142 LMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCR 1201
Query: 434 SQHEELSHRDGVWNLQNEVTKERTA 508
+ +EE +H+DGVWNLQNEVTKERTA
Sbjct: 1202 TSYEEFTHKDGVWNLQNEVTKERTA 1226
Score = 176 bits (429), Expect = 6e-44
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +3
Query: 3 ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
ASEMAGPPQ+PNDFLS+QD TE AHPIRL+CRYIDRIHIFFRF+A+EARDLIQRYLTEH
Sbjct: 1058 ASEMAGPPQMPNDFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEH 1117
Query: 183 PDPNNENIVGYNNKKCWPRDARMR 254
PDPNNENIVGYNNKKCWPRDARMR
Sbjct: 1118 PDPNNENIVGYNNKKCWPRDARMR 1141
Score = 155 bits (377), Expect = 1e-37
Identities = 73/78 (93%), Positives = 77/78 (98%)
Frame = +1
Query: 505 SKCYLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 684
++C+LRVDDES+ RFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL
Sbjct: 1226 AQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 1285
Query: 685 DLLVKCENKIQTRIKIGL 738
DLLVKCENKIQTRIKIGL
Sbjct: 1286 DLLVKCENKIQTRIKIGL 1303
>AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8
protein.
Length = 2335
Score = 177 bits (431), Expect = 3e-44
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = +2
Query: 254 LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
LMKHDVNLGRAVFWDIKNRLPRSVTT+QWENSFVSVYSKDNPNLLFNM GFECRILPKCR
Sbjct: 1142 LMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCR 1201
Query: 434 SQHEELSHRDGVWNLQNEVTKERTA 508
+ +EE +H+DGVWNLQNEVTKERTA
Sbjct: 1202 TSYEEFTHKDGVWNLQNEVTKERTA 1226
Score = 176 bits (429), Expect = 6e-44
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +3
Query: 3 ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
ASEMAGPPQ+PNDFLS+QD TE AHPIRL+CRYIDRIHIFFRF+A+EARDLIQRYLTEH
Sbjct: 1058 ASEMAGPPQMPNDFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEH 1117
Query: 183 PDPNNENIVGYNNKKCWPRDARMR 254
PDPNNENIVGYNNKKCWPRDARMR
Sbjct: 1118 PDPNNENIVGYNNKKCWPRDARMR 1141
Score = 155 bits (377), Expect = 1e-37
Identities = 73/78 (93%), Positives = 77/78 (98%)
Frame = +1
Query: 505 SKCYLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 684
++C+LRVDDES+ RFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL
Sbjct: 1226 AQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 1285
Query: 685 DLLVKCENKIQTRIKIGL 738
DLLVKCENKIQTRIKIGL
Sbjct: 1286 DLLVKCENKIQTRIKIGL 1303
>AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.
Length = 2335
Score = 177 bits (431), Expect = 3e-44
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = +2
Query: 254 LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
LMKHDVNLGRAVFWDIKNRLPRSVTT+QWENSFVSVYSKDNPNLLFNM GFECRILPKCR
Sbjct: 1142 LMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCR 1201
Query: 434 SQHEELSHRDGVWNLQNEVTKERTA 508
+ +EE +H+DGVWNLQNEVTKERTA
Sbjct: 1202 TSYEEFTHKDGVWNLQNEVTKERTA 1226
Score = 176 bits (429), Expect = 6e-44
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +3
Query: 3 ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
ASEMAGPPQ+PNDFLS+QD TE AHPIRL+CRYIDRIHIFFRF+A+EARDLIQRYLTEH
Sbjct: 1058 ASEMAGPPQMPNDFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEH 1117
Query: 183 PDPNNENIVGYNNKKCWPRDARMR 254
PDPNNENIVGYNNKKCWPRDARMR
Sbjct: 1118 PDPNNENIVGYNNKKCWPRDARMR 1141
Score = 153 bits (372), Expect = 5e-37
Identities = 72/78 (92%), Positives = 77/78 (98%)
Frame = +1
Query: 505 SKCYLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 684
++C+LRVDDES+ RFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL
Sbjct: 1226 AQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 1285
Query: 685 DLLVKCENKIQTRIKIGL 738
DLLVKCE+KIQTRIKIGL
Sbjct: 1286 DLLVKCEHKIQTRIKIGL 1303
>BT006755-1|AAP35401.1| 486|Homo sapiens Sec23-interacting protein
p125 protein.
Length = 486
Score = 30.7 bits (66), Expect = 5.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 27 QLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEHPDPNN 197
Q+P+ FL Q E P YC+ ++ ++ FS ++ +L + Y + PDP +
Sbjct: 255 QVPSPFLL--QNQYEPVQPHWFYCKEVEYKQLWMPFSVFDSLNLEEIYNSVQPDPES 309
>BC063800-1|AAH63800.1| 1000|Homo sapiens SEC23 interacting protein
protein.
Length = 1000
Score = 30.7 bits (66), Expect = 5.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 27 QLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEHPDPNN 197
Q+P+ FL Q E P YC+ ++ ++ FS ++ +L + Y + PDP +
Sbjct: 255 QVPSPFLL--QNQYEPVQPHWFYCKEVEYKQLWMPFSVFDSLNLEEIYNSVQPDPES 309
>AB019435-1|BAA77392.1| 1000|Homo sapiens phospholipase protein.
Length = 1000
Score = 30.7 bits (66), Expect = 5.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 27 QLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEHPDPNN 197
Q+P+ FL Q E P YC+ ++ ++ FS ++ +L + Y + PDP +
Sbjct: 255 QVPSPFLL--QNQYEPVQPHWFYCKEVEYKQLWMPFSVFDSLNLEEIYNSVQPDPES 309
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,217,738
Number of Sequences: 237096
Number of extensions: 2359119
Number of successful extensions: 4592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4592
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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