Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20797
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 172 2e-43
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 34 0.12
Z46381-5|CAD92392.1| 328|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 31 1.1
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 31 1.1
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 31 1.1
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 31 1.1
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF067947-5|AAO25993.2| 380|Caenorhabditis elegans Hypothetical ... 30 2.0
U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide tr... 28 7.9
AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity ... 28 7.9
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 172 bits (419), Expect = 2e-43
Identities = 74/85 (87%), Positives = 82/85 (96%)
Frame = +2
Query: 254 LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
LMKHDVNLGRAVFWDIKNRLPRS+TT++WENSFVSVYSKDNPN+LF+M+GFECRILPKCR
Sbjct: 1134 LMKHDVNLGRAVFWDIKNRLPRSITTVEWENSFVSVYSKDNPNMLFDMSGFECRILPKCR 1193
Query: 434 SQHEELSHRDGVWNLQNEVTKERTA 508
+ +EE HRDGVWNLQNEVTKERTA
Sbjct: 1194 TANEEFVHRDGVWNLQNEVTKERTA 1218
Score = 164 bits (399), Expect = 5e-41
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = +3
Query: 3 ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
ASE+AGPPQ PN+FL +QD TE HPIRLYCRYIDR+ I FRFSA+EARDLIQRYLTEH
Sbjct: 1050 ASEIAGPPQCPNEFLQFQDVATEIGHPIRLYCRYIDRVWIMFRFSADEARDLIQRYLTEH 1109
Query: 183 PDPNNENIVGYNNKKCWPRDARMR 254
PDPNNENIVGYNNKKCWPRDARMR
Sbjct: 1110 PDPNNENIVGYNNKKCWPRDARMR 1133
Score = 151 bits (367), Expect = 4e-37
Identities = 69/78 (88%), Positives = 78/78 (100%)
Frame = +1
Query: 505 SKCYLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 684
++C+L+VD+ESL++FHNR+RQILM+SGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL
Sbjct: 1218 AQCFLKVDEESLSKFHNRIRQILMSSGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELL 1277
Query: 685 DLLVKCENKIQTRIKIGL 738
DLLVKCENKIQTRIKIGL
Sbjct: 1278 DLLVKCENKIQTRIKIGL 1295
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 520 RVDDESLARFHNR---VRQILMASG--STTFTKIVNKWNTALIGLMTYFREAVVNTQELL 684
R++D+ LA R V +++A+ S K+ NK T GL RE N Q
Sbjct: 332 RMEDKKLANTIARNLYVDNLIIATDDDSEAMFKLYNKVKTVFNGLSMNIREFQSNDQSFT 391
Query: 685 DLLVKCENKIQTRIKI 732
DLL +C+ ++ +K+
Sbjct: 392 DLLDECDKTSESEVKV 407
>Z46381-5|CAD92392.1| 328|Caenorhabditis elegans Hypothetical
protein M01F1.8a protein.
Length = 328
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 347 SFVSVYSKDNPNLLFNMAGFECRILPKCRSQ-HEELS 454
+F + Y K+NPN +F+ FE + K +Q HEEL+
Sbjct: 283 NFANTYRKNNPNCIFSQPCFEGALKIKYLNQIHEELT 319
>Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 305 NRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCRSQHEELSHRDGVWNLQN 484
N+ R V TI E S S+ NP +A RI+ R Q EEL+ ++ + +N
Sbjct: 331 NQSGRMVRTIDEETQTDSSLSQANPQNADEVAKMN-RIIEDHRRQIEELNSKNSLERRKN 389
Query: 485 EVTKE 499
E +KE
Sbjct: 390 EASKE 394
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 305 NRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCRSQHEELSHRDGVWNLQN 484
N+ R V TI E S S+ NP +A RI+ R Q EEL+ ++ + +N
Sbjct: 398 NQSGRMVRTIDEETQTDSSLSQANPQNADEVAKMN-RIIEDHRRQIEELNSKNSLERRKN 456
Query: 485 EVTKE 499
E +KE
Sbjct: 457 EASKE 461
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 305 NRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCRSQHEELSHRDGVWNLQN 484
N+ R V TI E S S+ NP +A RI+ R Q EEL+ ++ + +N
Sbjct: 398 NQSGRMVRTIDEETQTDSSLSQANPQNADEVAKMN-RIIEDHRRQIEELNSKNSLERRKN 456
Query: 485 EVTKE 499
E +KE
Sbjct: 457 EASKE 461
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 305 NRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCRSQHEELSHRDGVWNLQN 484
N+ R V TI E S S+ NP +A RI+ R Q EEL+ ++ + +N
Sbjct: 398 NQSGRMVRTIDEETQTDSSLSQANPQNADEVAKMN-RIIEDHRRQIEELNSKNSLERRKN 456
Query: 485 EVTKE 499
E +KE
Sbjct: 457 EASKE 461
>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
F33H2.5 protein.
Length = 2144
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 362 YSKDNPN-LLFNMAG-FECRILPKCRSQHEELSHRDGVWNLQNEVTK 496
YSK + N + F + G ++C ILP + + ++L R V+NL + +
Sbjct: 899 YSKSSENSIYFEVDGPYQCMILPASKEEGKKLKKRYAVFNLDGSLAE 945
>AF067947-5|AAO25993.2| 380|Caenorhabditis elegans Hypothetical
protein T10B5.2 protein.
Length = 380
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 726 NTSLDLILAFHK*IEEFLCVNNGLAEVC-H*TNKSSIPFIDDF 601
NT+LDL A H + F C+++ L +VC H N +SI +++F
Sbjct: 232 NTTLDLYSAVHLIQQTFYCISD-LHKVCLHQRNNTSIVVLNNF 273
>U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide
transporter protein 2 protein.
Length = 835
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 395 MAGFECRILPKCRSQHEELSHRDGVWNL 478
M+G R+LP + HE+ ++ G++NL
Sbjct: 451 MSGIHKRVLPHDKYLHEDKKNKSGIYNL 478
>AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity
peptide transporter protein.
Length = 796
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 395 MAGFECRILPKCRSQHEELSHRDGVWNL 478
M+G R+LP + HE+ ++ G++NL
Sbjct: 412 MSGIHKRVLPHDKYLHEDKKNKSGIYNL 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,658
Number of Sequences: 27780
Number of extensions: 382649
Number of successful extensions: 1010
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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