Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20797
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 158 4e-39
At4g38780.1 68417.m05491 splicing factor, putative strong simila... 153 2e-37
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ... 32 0.35
At3g58530.1 68416.m06524 F-box family protein-related contains w... 29 2.4
At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR... 29 4.3
At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR... 29 4.3
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 28 5.6
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ... 28 7.4
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 28 7.4
>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2382
Score = 158 bits (383), Expect = 4e-39
Identities = 65/84 (77%), Positives = 77/84 (91%)
Frame = +3
Query: 3 ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
ASE+AGPPQ+PN+F+++ D + ET HPIRLY RYID++HI F+F+ EEARDLIQRYLTEH
Sbjct: 1104 ASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLTEH 1163
Query: 183 PDPNNENIVGYNNKKCWPRDARMR 254
PDPNNEN+VGYNNKKCWPRDARMR
Sbjct: 1164 PDPNNENMVGYNNKKCWPRDARMR 1187
Score = 149 bits (360), Expect = 3e-36
Identities = 68/88 (77%), Positives = 76/88 (86%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
LMKHDVNLGR+VFWD+KNRLPRS+TT++WEN FVSVYSKDNPNLLF+M GFE RILPK R
Sbjct: 1188 LMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRILPKIR 1247
Query: 434 SQHEELSH-RDGVWNLQNEVTKERTANA 514
E S+ +DGVWNLQNE TKERTA A
Sbjct: 1248 MTQEAFSNTKDGVWNLQNEQTKERTAVA 1275
Score = 138 bits (333), Expect = 5e-33
Identities = 66/75 (88%), Positives = 70/75 (93%)
Frame = +1
Query: 514 YLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLL 693
+LRVDDE + F NRVRQILM+SGSTTFTKIVNKWNTALIGLMTYFREA V+TQELLDLL
Sbjct: 1276 FLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLL 1335
Query: 694 VKCENKIQTRIKIGL 738
VKCENKIQTRIKIGL
Sbjct: 1336 VKCENKIQTRIKIGL 1350
>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2332
Score = 153 bits (370), Expect = 2e-37
Identities = 64/84 (76%), Positives = 75/84 (89%)
Frame = +3
Query: 3 ASEMAGPPQLPNDFLSYQDRQTETAHPIRLYCRYIDRIHIFFRFSAEEARDLIQRYLTEH 182
ASE+AGPPQ PN+F++Y D + ET HPIRLY RYID++HI F+F+ EEARDLIQR+LTE
Sbjct: 1056 ASEIAGPPQRPNEFMTYWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRHLTER 1115
Query: 183 PDPNNENIVGYNNKKCWPRDARMR 254
PDPNNEN+VGYNNKKCWPRDARMR
Sbjct: 1116 PDPNNENMVGYNNKKCWPRDARMR 1139
Score = 148 bits (359), Expect = 3e-36
Identities = 68/88 (77%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 LMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMAGFECRILPKCR 433
LMKHDVNLGR+VFWD+KNRLPRS+TT++WEN FVSVYSKDNPNLLF+M GFE R+LPK R
Sbjct: 1140 LMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRVLPKIR 1199
Query: 434 SQHEELSH-RDGVWNLQNEVTKERTANA 514
E S RDGVWNLQNE TKERTA A
Sbjct: 1200 MGQEAFSSTRDGVWNLQNEQTKERTAVA 1227
Score = 136 bits (328), Expect = 2e-32
Identities = 64/75 (85%), Positives = 69/75 (92%)
Frame = +1
Query: 514 YLRVDDESLARFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLL 693
+LR DDE + F NRVRQILM+SGSTTFTKIVNKWNTALIGLMTYFREA V+TQELLDLL
Sbjct: 1228 FLRADDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLL 1287
Query: 694 VKCENKIQTRIKIGL 738
VKCENKIQTR+KIGL
Sbjct: 1288 VKCENKIQTRVKIGL 1302
>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 619 NTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKI 732
N AL GL +F+E+ V +E +LL++ +NK R+K+
Sbjct: 124 NVALKGLAKFFKESSVEEREHAELLMEYQNKRGGRVKL 161
>At3g58530.1 68416.m06524 F-box family protein-related contains weak
similarity to F-box protein FBL2 (GI:6010699) [Rattus
norvegicus]
Length = 353
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 KCRSQHEELSHRDGVWNLQNEV-TKERTANATYALMTNPWLVSTIVSDKSLWL 580
K + EE R+ V ++ V T+ + L+ +PWL T++S S+WL
Sbjct: 5 KVTEEEEETWRREIVTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWL 57
>At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1175
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/67 (35%), Positives = 29/67 (43%)
Frame = +2
Query: 428 CRSQHEELSHRDGVWNLQNEVTKERTANATYALMTNPWLVSTIVSDKSLWLPDQRPLPKS 607
CRS + S DG L NEVT E N AL N S DK W+ L S
Sbjct: 286 CRSAFDRNSPPDGFMQLANEVT-ELVGNLPLAL--NIMGSSLKGRDKEEWIEMMPSLRNS 342
Query: 608 SINGILL 628
++G +L
Sbjct: 343 LVDGEIL 349
>At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1229
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/67 (35%), Positives = 29/67 (43%)
Frame = +2
Query: 428 CRSQHEELSHRDGVWNLQNEVTKERTANATYALMTNPWLVSTIVSDKSLWLPDQRPLPKS 607
CRS + S DG L NEVT E N AL N S DK W+ L S
Sbjct: 350 CRSAFDRNSPPDGFMQLANEVT-ELVGNLPLAL--NIMGSSLKGRDKEEWIEMMPSLRNS 406
Query: 608 SINGILL 628
++G +L
Sbjct: 407 LVDGEIL 413
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 619 NTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKI 732
N AL GL +F+E+ + +E + L++ +NK R+K+
Sbjct: 126 NIALKGLAKFFKESSLEEREHAEKLMEYQNKRGGRVKL 163
>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 596
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 294 QNTARPRLTSCFINAYEHPLASTFCYCNQQCSHC 193
Q P+LT F ++HP++S++C + CS C
Sbjct: 7 QLATMPKLTVPF---HDHPMSSSYCIFLESCSLC 37
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 455 HRDGVWNLQNEVTKERTANATYALMTNPWLVSTIVSDKS 571
H DG N+ N + + L+ +PW STI + KS
Sbjct: 56 HNDGCMNMHNSFFEGLLIDPNDQLLPDPWSKSTIPNAKS 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,061
Number of Sequences: 28952
Number of extensions: 351009
Number of successful extensions: 845
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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