Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20796
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.21 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.63 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.83 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.83 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   0.83 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.83 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   0.83 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   0.83 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   0.83 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   0.83 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.83 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   5.8  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   7.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 22/88 (25%), Positives = 37/88 (42%)
 Frame = +1

Query: 43   PIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSG 222
            P P  C  YY  V  + + R  Y   GL  H     ++  W K +       GH   +S 
Sbjct: 1110 PDPHNCNAYYRCV--LGELRKQYCAGGL--HWNKERKICDWPKSAKCEEKKPGHKPSTSS 1165

Query: 223  TGQPYGPTFTTETSSDVESTWSTTRAST 306
              +P  P++   ++++   T +TT  +T
Sbjct: 1166 WQKPTKPSYRPPSTTNHWQTKTTTSTTT 1193


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -2

Query: 575 CCSTRGAPGTSTPSCATPGATVLLVGQRELIDGDPGPSAQLLQHVLDVENERLLTEVRVH 396
           C ST+  P  + P      A      Q EL    P P+  LL+H     N  +++ V+  
Sbjct: 86  CGSTQLWPQPTGPVTLASRAVTFNHQQLELETDTPEPARTLLEHSFVAFNTNIISLVQNK 145

Query: 395 DLAGR 381
           D   R
Sbjct: 146 DYVER 150


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 73  STNGAPPRSTPPLSTP 88


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 569 STRGAPGTSTPSCATP 522
           ST GAP  STP  +TP
Sbjct: 117 STNGAPPRSTPPLSTP 132


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 157 PGWDKHSYGYHGDDGHSFCSSGTGQPYGP 243
           PG   H Y    +   S  SSG+  PY P
Sbjct: 121 PGPPSHPYTVISNGYSSPMSSGSYDPYSP 149


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 244 WVRRAARYRKNKTNGRRLRGSRRNAC 167
           W RR  R   N +    L+G+R   C
Sbjct: 22  WFRRGLRLHDNPSLREGLKGARTFRC 47


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -1

Query: 441 PRCRKRTAADRSSCPRPRRASEA 373
           P C+    A   +CP P   S +
Sbjct: 144 PECKNEEVAGGFTCPAPGEVSNS 166


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -1

Query: 441 PRCRKRTAADRSSCPRPRRASEA 373
           P C+    A   +CP P   S +
Sbjct: 144 PECKNEEVAGGFTCPAPGEVSNS 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,301
Number of Sequences: 336
Number of extensions: 3130
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)