Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20796
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    98   1e-21
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    42   5e-05
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.0  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    27   2.7  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   6.2  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   6.2  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   6.2  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    25   8.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.2  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   8.2  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    25   8.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   8.2  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 41/83 (49%), Positives = 56/83 (67%)
 Frame = +1

Query: 7   THRDAASVRATHPIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGY 186
           T  DAASV+A H IP+   +YY+E++I+S+G++G MG+G     +  NRLPG    S+GY
Sbjct: 94  TEHDAASVKADHAIPSNTSIYYYEIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGY 153

Query: 187 HGDDGHSFCSSGTGQPYGPTFTT 255
           HG+ G  F  S TG+ YGP FTT
Sbjct: 154 HGNSGEKFNCSKTGEAYGPEFTT 176



 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 35/62 (56%), Positives = 49/62 (79%)
 Frame = +3

Query: 255 GDVIGCGVNLVDNTCFYTKNGHHLGIAFRGLPPNLYPTVGLQTPGEVVDTNFGQQPFVFD 434
           GD+IGCGVN ++ T FYTKNG +LG+AF+ +   LYP +GL++ GE V+ NFGQ PF++D
Sbjct: 177 GDIIGCGVNFINRTIFYTKNGAYLGVAFKKVSDVLYPVIGLKSHGEHVEVNFGQNPFLYD 236

Query: 435 IE 440
           I+
Sbjct: 237 ID 238


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +1

Query: 43  PIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSG 222
           P+     +YYFEV+++    D  + IGL+       RLPGW+  S  Y  D      S  
Sbjct: 159 PLQRINEVYYFEVKLLDVPIDTLVSIGLATKPYPPFRLPGWNFWSTAYVSDGTRRSNSPF 218

Query: 223 TGQPY 237
           TG+PY
Sbjct: 219 TGKPY 223



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 255 GDVIGCGVNLVDNTCFYTKNGH---HLGIAFRGLPPNLYPTVGLQTPGEVVDTNFGQQPF 425
           GDVIG G     N  F+T+NG     L   +R    NLYPTVG   P   +  N GQ  +
Sbjct: 230 GDVIGVGYKPKCNRIFFTRNGRRCAELPCTYR----NLYPTVGAIGPC-TLHVNLGQAGY 284

Query: 426 VFDIEDMLKELR 461
           VF IE  +K+ R
Sbjct: 285 VF-IEANIKKWR 295


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 262  SSDVESTWSTTRASTPRMDII*ESLSEDYRQIYIRQSGF--RRPA 390
            S D+ S+W     S PR+D +  SL   + +       F   RPA
Sbjct: 1531 SEDISSSWLGRTVSRPRLDTVLSSLGSKFSKFVAGDPNFDVMRPA 1575


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 144 VDSMCGQSDPHVPVPSFRY 88
           +D  C +S PH+P  +FRY
Sbjct: 112 LDKKCPESAPHLPFVAFRY 130


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 158 GNLFMLTPCADSPIPMYPSRPLDTI 84
           G LF+L  CA   +  Y SRPL  I
Sbjct: 118 GALFILFSCAQFHLVYYMSRPLSNI 142


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -2

Query: 557 APGTSTPSCATPGATVLLVGQRELIDGDPGPSAQLLQHVLDVENERLLTEVRVHDLAGRL 378
           A G + P+    G   LLVG    I  +PG     +QH  D     L +E    D  G  
Sbjct: 153 AKGNARPTGGA-GCVALLVGPNAPIVFEPGLRGTYMQHAYDFYKPDLTSEYPYVD--GHF 209

Query: 377 KPDCRI 360
             +C +
Sbjct: 210 SLECYV 215


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -2

Query: 581 APCCSTRG--APGTSTPSCATPG 519
           AP  S  G  APGT TP   TPG
Sbjct: 476 APGVSAPGTEAPGTGTPGLTTPG 498


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 184 YHGDDGHSFCS 216
           +H DDGH FCS
Sbjct: 191 FHQDDGHIFCS 201


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 199 GHSFCSSGTGQPYGPTFTTETSSDVESTWSTTRASTP 309
           G S  S+GTG   G T  TETS+  E+T   T    P
Sbjct: 792 GSSVTSTGTGTTTGVTEVTETST-FETTEIITSTIEP 827


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 163 WDKHSYGYHGDDGHSFCSS 219
           +D H++ +HG D HS  SS
Sbjct: 22  YDHHNHDHHGHDHHSHDSS 40


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 482 DGDPGPSAQLLQHVLDVENERLLTEVRVHD 393
           DGDP P  QL++ +L+   +  ++ +   D
Sbjct: 133 DGDPDPKKQLVRDILEKARQHTISPLDEQD 162


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 13  RDAASVRATHPIPAACGLYYFEVRIVS 93
           RDAAS + T+ IP  CG   F V +++
Sbjct: 67  RDAASSKPTNYIPLLCGRRLFLVCLMA 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,366
Number of Sequences: 5004
Number of extensions: 49492
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)