Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20796
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 1e-33
SB_9490| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_17539| Best HMM Match : Cu2_monoox_C (HMM E-Value=1e-24) 33 0.13
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05) 31 0.70
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14) 31 0.92
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.92
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 29 2.1
SB_40087| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_11651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14) 28 4.9
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 28 6.5
SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 27 8.6
SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 27 8.6
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48) 27 8.6
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 27 8.6
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 139 bits (337), Expect = 1e-33
Identities = 60/85 (70%), Positives = 74/85 (87%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTCFYTKNGHHLGIAFRGLPPNLYPTVGLQTPGEVVDTNFGQQPFVFD 434
GDVIGCG+NL+DNTCFYTKNG +LGIAFR LPPNLYPTVGLQTPGEVVD NFGQ PFV++
Sbjct: 115 GDVIGCGLNLIDNTCFYTKNGVNLGIAFRDLPPNLYPTVGLQTPGEVVDANFGQLPFVYN 174
Query: 435 IEDMLKELRARTRVAIDEFPLPDEQ 509
IE+ +KE+ TR I+++P+ D++
Sbjct: 175 IEEEMKEISTFTRNTIEKYPVCDKE 199
Score = 78.6 bits (185), Expect = 4e-15
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +1
Query: 154 LPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTT 255
LP W+K+SYGYHGDDGHSFCSSGTG+PYGPTFTT
Sbjct: 81 LPRWEKNSYGYHGDDGHSFCSSGTGKPYGPTFTT 114
Score = 44.8 bits (101), Expect = 5e-05
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 491 PAARRAGQWHQVLHTMVSTYLVHHGYCSTVQA 586
P + G W L +VSTYLVHHGYC+T +A
Sbjct: 194 PVCDKEGIWQTTLQKIVSTYLVHHGYCATAEA 225
>SB_9490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 112 MGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSF 210
+ +GL + G N++ PGW ++ GYH DDG F
Sbjct: 12 LAVGLVSRGYNLHLFPGWQSNTVGYHVDDGKVF 44
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTC-----FYTKNGHHLGIAFRGLPPNLYPTVGLQTPGEVVDTNFGQQ 419
G VIGCG + D+ ++T NG L + + L+P V LQ V NFG +
Sbjct: 2246 GHVIGCGYSRTDSRSDTGLVYFTHNGQRLHGSLGNVSAGLWPVVHLQKKDVRVRVNFGTR 2305
Query: 420 PFVF 431
PF++
Sbjct: 2306 PFMY 2309
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 22 ASVRATHPIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLP 159
A V A+ P+P YY+EV IVS G G G +++ P
Sbjct: 2105 AYVYASSPLPLKAPSYYWEVEIVSLGEQGTGDYGAGIQAISVGLAP 2150
>SB_17539| Best HMM Match : Cu2_monoox_C (HMM E-Value=1e-24)
Length = 723
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 177 GMLVPPG-QSVHVDSMCGQSDPHVPVPSFRYDSNLEVVEPTRGGYRM 40
G+ VPP Q VHVD C D H P+ +F Y ++ + GYR+
Sbjct: 158 GLWVPPDTQEVHVDLACKYQDDH-PIYAFAYRTHAHGLGRVISGYRV 203
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTCFYTKNGHHLGIAFRGL-PPNLYPTVGL--QTPGEVV 398
GD + C +++ T + KNG +AF G+ +YP V TPGE V
Sbjct: 384 GDFLTCVLDMEARTLAFGKNGEEPRVAFEGIDATEVYPCVMFYSNTPGEKV 434
>SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)
Length = 485
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 100 RDGYMGIGLSAHGVNMNRLPGW-DKHSYGYHGDDGHSFCSSGT 225
R GY G HG + + PG+ DK +GY GD + S T
Sbjct: 148 RHGYKGE--QKHGFEIEQRPGYEDKQKFGYEGDKSPDYKDSAT 188
>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
Length = 453
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 258 DVIGCGVNL-VDNTC-FYTKNGHHLGIAFRGLPPNLY 362
D+I C ++L C F+ KNG +LG+AFR L P Y
Sbjct: 58 DIITCYIDLDASPKCIFFAKNGLYLGVAFR-LGPEAY 93
>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 30.7 bits (66), Expect = 0.92
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +3
Query: 252 DGDVIGCGVNLVDNTCFYTKNGHHLGIAFRGLPP---NLYPTVGLQTPGEVVDTNFGQQP 422
D VIG +++ T + KNG LG+AF GL LYP V+ +
Sbjct: 189 DSTVIGVLLDMDKGTISFFKNGQPLGVAFTGLQDRGCELYPIASSTASESEVELGYRCCK 248
Query: 423 FVFDIEDMLKE-LRARTRVAIDEFPLP 500
+ I+ E ++ R ++ PLP
Sbjct: 249 YSTLIDQCCMEIIKHVNRDNMNRLPLP 275
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -1
Query: 585 ACTVLQY--PWCTRYVDTIVCNTWCHCPARRAAGTHRWRPWSERAAP 451
+CT+ ++ PWC V W +CP R WR RA P
Sbjct: 2935 SCTMTRHNRPWCAITPSYDVDRLWGNCPGRVVEHLGCWRDTGRRAIP 2981
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 160 GWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTETSSDVESTWSTTRASTPR 312
G+ H YG H +GT + + P T +S V ST++T +P+
Sbjct: 435 GYPPHIYGPHLAAACRLRDAGTPRAFNPRPPTSVASIVSSTYATEPEGSPK 485
>SB_40087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 525 TWCHCPARRAAGTHRWRPWSERAAPSACPRCRKR 424
T+ H +R A H WR W+E + P C R
Sbjct: 92 TFLHNLVKRGAFPHFWRIWAEMYQTESIPECIAR 125
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 97 GRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTF 249
GR GY G G G+D++S G +G G S+ S G G YG ++
Sbjct: 211 GRGGYGG------GGGYGGYGGYDQYSGGGYGGYGDSYGSYGGGGGYGSSY 255
>SB_11651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -1
Query: 492 GTHRWRPWSERAAPSACPRCRKRTAADRSSCPRPRRASEARLSDINLAVVL*KRFLND 319
G R WSERA + +R SS R S+ L+ ++ VV RF N+
Sbjct: 411 GDGRKETWSERAEAAKSRLSDRRKDRSSSSLSRDHATSQTNLTGSDVKVVKYSRFDNE 468
>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
Length = 360
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 85 IVSKGRDGYMGIGLSAHGVNMNRLPG 162
+ +K D Y+ + +SA VNMN PG
Sbjct: 66 VTTKAGDAYVSLDISAPSVNMNAPPG 91
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 258 DVIGCGVNLVDNTCFYTKNG 317
D IGC +NL + T Y+KNG
Sbjct: 92 DTIGCYINLDNGTVKYSKNG 111
>SB_49317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 247 FTTETSSDVESTWSTTRAST 306
F+ SS + S+WSTT++ST
Sbjct: 289 FSASVSSSISSSWSTTQSST 308
>SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 247 FTTETSSDVESTWSTTRAST 306
F+ SS + S+WSTT++ST
Sbjct: 218 FSASASSSISSSWSTTQSST 237
>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 300 FYTKNGHHLGIAFRGLP-PNLYPTV 371
F T G +LG+AFRGL +YP V
Sbjct: 197 FETLEGKYLGVAFRGLKGQTVYPVV 221
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 441 PRCRKRTAADRSSCPRPRRASEAR 370
PR RK+ A DRS PR R S R
Sbjct: 193 PRERKKVARDRSRSPRSRSRSRER 216
>SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 288
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 127 SAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFT-TETSSDVESTWSTTRAS 303
S G + +R+P W H + + G Q PT+T TE + V+S TRA
Sbjct: 221 SFRGQHQSRIPTWTAPEPDPHVNSNRAKSPRGQQQSQIPTWTATEPNPHVDS----TRAK 276
Query: 304 TPR 312
+PR
Sbjct: 277 SPR 279
>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
Length = 776
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 68 TTSRLESYLKDGTGTWGSDCPHMEST*TDCPGGTSI 175
T+ R KDG T G + P M S+ T P G +I
Sbjct: 401 TSLRQRILAKDGANTRGGEPPPMPSSMTTLPSGNTI 436
>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 79 VRIVSKGRDGYMGIGLSAHGV 141
+R +SK RDGYMGI +A G+
Sbjct: 245 IRSLSKFRDGYMGITSNAMGL 265
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 563 RGAPGTSTPSCATPGATVLLVG-QRELIDGDPGPSAQLLQHVLDVENERLLTEV 405
RG+ T SCA PG LL ++ D + P+A + + +EN LT+V
Sbjct: 223 RGSSLNVTVSCADPGGLELLASFTVDVSDVNESPTAISISSLQILENRPALTKV 276
>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 579 TVLQYPWCTRYVDTIVCNTWCHCPARRAAGT 487
T + P CT+Y + C CP+R AAGT
Sbjct: 642 TKIHKPTCTKYGSA--GSARCRCPSRLAAGT 670
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,918
Number of Sequences: 59808
Number of extensions: 443996
Number of successful extensions: 1620
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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