Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20796
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 93 2e-19
AL023828-3|CAA19468.1| 572|Caenorhabditis elegans Hypothetical ... 36 0.016
AL023828-2|CAA19449.1| 570|Caenorhabditis elegans Hypothetical ... 36 0.016
U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical p... 36 0.021
U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic... 31 0.46
Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 1.9
U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated p... 29 3.2
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 29 3.2
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 29 3.2
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 29 3.2
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 3.2
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 29 3.2
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 29 3.2
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 3.2
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 29 3.2
Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical pr... 28 4.3
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 28 4.3
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 28 4.3
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 28 4.3
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 28 4.3
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z46343-3|CAA86459.1| 316|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 5.7
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 5.7
Z95559-15|CAB63361.1| 917|Caenorhabditis elegans Hypothetical p... 27 7.5
Z82073-3|CAB04926.1| 631|Caenorhabditis elegans Hypothetical pr... 27 7.5
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 27 7.5
AL031633-23|CAA21030.1| 188|Caenorhabditis elegans Hypothetical... 27 7.5
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 27 7.5
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 27 9.9
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 9.9
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 27 9.9
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/77 (55%), Positives = 52/77 (67%)
Frame = +1
Query: 19 AASVRATHPIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDD 198
A VRA I G+YYFEVRI+ +G G MGIGLS ++NR+PGWD +GYHGDD
Sbjct: 80 AGVVRADAFIQQCIGVYYFEVRIL-EGHSGCMGIGLSKKDCDLNRMPGWDPGCFGYHGDD 138
Query: 199 GHSFCSSGTGQPYGPTF 249
G+ F +SG GQ YGP F
Sbjct: 139 GNFFLASGVGQAYGPKF 155
Score = 71.7 bits (168), Expect = 4e-13
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTCFYTKNGHHLGIAFRG--LPPNLYPTVGLQTPGEVVDTNFGQQPFV 428
GDVIGCG++ + F+TKNG HLGIA LYPTVG +T GE + NFG +PF
Sbjct: 158 GDVIGCGIDTFYHYVFFTKNGKHLGIAHTSPTALKELYPTVGFKTRGEKLVANFGVKPFE 217
Query: 429 FDIEDMLKELRARTRVAIDEFPLPD 503
FD E + L + ++ +P+
Sbjct: 218 FDFEAYRQHLMNKKIHLLENIKMPE 242
>AL023828-3|CAA19468.1| 572|Caenorhabditis elegans Hypothetical
protein Y17G7B.2b protein.
Length = 572
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 31 RATHPIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSF 210
RA+H + G +YFEV + D ++ IG S ++ G++K SYG+ G F
Sbjct: 331 RASHGVSK--GTWYFEVNFDDQPDDSHIRIGWSQSYASLQACVGYNKFSYGWRSKHGTKF 388
>AL023828-2|CAA19449.1| 570|Caenorhabditis elegans Hypothetical
protein Y17G7B.2a protein.
Length = 570
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 31 RATHPIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSF 210
RA+H + G +YFEV + D ++ IG S ++ G++K SYG+ G F
Sbjct: 329 RASHGVSK--GTWYFEVNFDDQPDDSHIRIGWSQSYASLQACVGYNKFSYGWRSKHGTKF 386
>U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical
protein F20A1.9 protein.
Length = 433
Score = 35.9 bits (79), Expect = 0.021
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +3
Query: 258 DVIGCGVNLVDNTCFYTKNGHHLGIAF------RGLPPNLYPTVGLQTPGEVVDTNFGQQ 419
DVIGC ++L T +++KNG AF + L+P V Q + NFG Q
Sbjct: 109 DVIGCYLDLDSRTIWWSKNGEQFPAAFSIDVKYKNSNTCLFPAVLCQNSS--LSVNFGSQ 166
Query: 420 PFVF 431
PF F
Sbjct: 167 PFKF 170
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 61 GLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHG 192
G YY+EV I SK G +G + G ++N G D YG G
Sbjct: 50 GKYYYEVTITSK---GLCRVGWATLGGSLNIGKGLDSFGYGGTG 90
>U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic
protein protein 1 protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTCFYTKNGHHLGIAFRGLPP-NLYPTV 371
GD I ++ + ++ +N LGIAF +PP LYP V
Sbjct: 273 GDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAV 312
>Z93385-8|CAN86626.1| 560|Caenorhabditis elegans Hypothetical
protein M01E5.3c protein.
Length = 560
Score = 31.1 bits (67), Expect = 0.61
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 587 RPAPCCS--TRGAPGTSTPSCATPGATVLLVGQRELIDGDPGPSAQLLQHVLDVENERLL 414
+PAP RG PG GA V ++ + D P+ + H+L+V NE
Sbjct: 246 QPAPVQDGPVRGPPGIINQGRVVVGAHVYEFRAADVPNADGVPAVHNINHLLNVLNENAG 305
Query: 413 TEVRVHDLAGRL 378
+VRV L R+
Sbjct: 306 NDVRVIVLPSRV 317
>Z93385-7|CAN86625.1| 556|Caenorhabditis elegans Hypothetical
protein M01E5.3b protein.
Length = 556
Score = 31.1 bits (67), Expect = 0.61
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 587 RPAPCCS--TRGAPGTSTPSCATPGATVLLVGQRELIDGDPGPSAQLLQHVLDVENERLL 414
+PAP RG PG GA V ++ + D P+ + H+L+V NE
Sbjct: 246 QPAPVQDGPVRGPPGIINQGRVVVGAHVYEFRAADVPNADGVPAVHNINHLLNVLNENAG 305
Query: 413 TEVRVHDLAGRL 378
+VRV L R+
Sbjct: 306 NDVRVIVLPSRV 317
>Z93385-6|CAB07641.1| 558|Caenorhabditis elegans Hypothetical
protein M01E5.3a protein.
Length = 558
Score = 31.1 bits (67), Expect = 0.61
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 587 RPAPCCS--TRGAPGTSTPSCATPGATVLLVGQRELIDGDPGPSAQLLQHVLDVENERLL 414
+PAP RG PG GA V ++ + D P+ + H+L+V NE
Sbjct: 246 QPAPVQDGPVRGPPGIINQGRVVVGAHVYEFRAADVPNADGVPAVHNINHLLNVLNENAG 305
Query: 413 TEVRVHDLAGRL 378
+VRV L R+
Sbjct: 306 NDVRVIVLPSRV 317
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 466 GPGSPSMSSRCPTSRTVAPGVAHDGVDVPGAPRVLQHGAG 585
GP +P ++ P + PG A G PG P+ Q+ G
Sbjct: 277 GPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQG 316
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 466 GPGSPSMSSRCPTSRTVAPGVAHDGVDVPGAPRVLQHGAG 585
GP +P ++ P + PG A G PG P+ Q+ G
Sbjct: 275 GPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQG 314
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +1
Query: 139 VNMNRLPGWDKHSYGYHGDDGHSF----CSSGTGQPYGPTFTTETSSDVESTWS 288
+ ++PG D+ Y Y G G F C SG Q G +T T+S ST S
Sbjct: 109 ITCEKVPGKDESVYWYEGQRGRFFCRNKCDSGLEQD-GSATSTSTTSITTSTLS 161
>U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated
protein 44, isoform g protein.
Length = 1004
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
Length = 1786
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 135 MCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
+C Q D HVPV Y++ E+ T GY
Sbjct: 695 LCAQED-HVPVAQILYNNGAEINSKTNAGY 723
>Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical
protein F09C8.2 protein.
Length = 762
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 172 HSYGYHGDDGHSFCSSGTGQPYGPTFTTETSSDVESTWSTTRASTPRMDII 324
+ +G GDD SF +P PTF+ + + ST +T A +++I
Sbjct: 204 YQHGNDGDDEESFGEPERYEPMSPTFSIHSFAPTTST-NTAEAEDLEVELI 253
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 177 GMLVPPGQSV----HVDSMCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
G PPG S H S CG + P S D+N E +P RGGY
Sbjct: 264 GPFGPPGDSGEPGGHCPSSCGVQEIVAPSVS-ELDTNDEPEKPARGGY 310
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 177 GMLVPPGQSV----HVDSMCGQSDPHVPVPSFRYDSNLEVVEPTRGGY 46
G PPG S H S CG + P S D+N E +P RGGY
Sbjct: 264 GPFGPPGDSGEPGGHCPSSCGVQEIVAPSVS-ELDTNDEPEKPARGGY 310
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 466 GP-GSPSMSSRCPTSRTV-APGVAHDGVDVPGAP 561
GP GSP S + ++ V APG VDVPGAP
Sbjct: 244 GPAGSPGRSGQPGSNGNVGAPGAPGQVVDVPGAP 277
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 61 GLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSF 210
G++Y+EV I + + IG++ VN N + G D H + + D S+
Sbjct: 635 GVHYWEVTIDRHDGNSDIVIGVAQPAVNRNVMLGKDLHGWSMYVDGERSW 684
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 105 RVHGDRTVRTWSQHEQIARVGQA 173
R+H +T+RTW + ++ A+V QA
Sbjct: 202 RLHMAKTIRTWIRQDKFAQVDQA 224
>Z46343-3|CAA86459.1| 316|Caenorhabditis elegans Hypothetical
protein T23F11.4 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 157 PGWDKHSYGYHGDDGHSFCSSGT-GQPYGPTFTTET--SSDVESTWST 291
P +K S GY+G+D S CSS T +P T+T +S+ W T
Sbjct: 59 PPPNKKSKGYNGEDYGSPCSSATPSEPVDLGILTKTNGNSNGNHNWDT 106
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 277 STWSTTRASTPRM-DII*ESLSEDYRQIYIRQ 369
S WSTT++ P M I+ L+ED R Y+ Q
Sbjct: 192 SRWSTTKSFVPGMPTILPADLTEDQRNAYLLQ 223
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 277 STWSTTRASTPRM-DII*ESLSEDYRQIYIRQ 369
S WSTT++ P M I+ L+ED R Y+ Q
Sbjct: 192 SRWSTTKSFVPGMPTILPADLTEDQRNAYLLQ 223
>Z95559-15|CAB63361.1| 917|Caenorhabditis elegans Hypothetical
protein Y41E3.11 protein.
Length = 917
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTCFYTKNGHHLGIAFRGLP----PNLYPTVGLQTPGEVVDTNFGQQ 419
GDV+ C +L T Y NG ++G F L ++PT+ T ++ N GQ+
Sbjct: 322 GDVVTCIFDLSVGTISYQINGENVGSPFESLQFREGDVIFPTI--CTKNANINVNMGQE 378
>Z82073-3|CAB04926.1| 631|Caenorhabditis elegans Hypothetical
protein W06D12.5 protein.
Length = 631
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 148 NRLPGWDKHSYGYHGDDGHSFCSSGT-GQPYGPT 246
N+LPG +H H D F S G G+P PT
Sbjct: 161 NKLPGRLQHRLSVHTDAASRFSSPGAMGEPVVPT 194
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 250 TTETSSDVESTWSTTRASTPRMDII*ESLSEDYRQI 357
TTETSS S+ ST P+ +I +S S +R++
Sbjct: 497 TTETSSTKSSSTSTKVVDVPKEKVIEKSKSSGWRRL 532
>AL031633-23|CAA21030.1| 188|Caenorhabditis elegans Hypothetical
protein Y39A1A.21a protein.
Length = 188
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 408 FGQQPFVFDIEDMLKELRARTRVAIDEFPLPD 503
FG + + D+ L E+R+ T + FPLP+
Sbjct: 134 FGAESLMGDLVPKLSEMRSNTNLLACRFPLPE 165
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 193 DDGHSFCSSGTGQPYGPTFTTETSSDVESTWSTTRAST 306
+D H CSSG+ P P T +S V +T ST+ T
Sbjct: 221 EDNHKDCSSGSTSPTCPKNATAVAS-VTTTASTSTTKT 257
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTCFYTKNGHHL 326
GDV+GC ++L D T ++ NG L
Sbjct: 1030 GDVVGCFLDLNDRTISFSLNGELL 1053
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 255 GDVIGCGVNLVDNTCFYTKNGHHL 326
GDV+GC ++L D T ++ NG L
Sbjct: 1151 GDVVGCFLDLNDRTISFSLNGELL 1174
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +3
Query: 258 DVIGCGVNLVDNTCFYTKNGHHLGIA------FRGLPPNLYPTVGLQTPGEVVDTNFG 413
DV+GC ++L + +++KNG +A F+ LYP + Q G + NFG
Sbjct: 187 DVLGCFLDLDELKIWWSKNGVQFPVAYQIDKKFKTAATCLYPAILCQNSG--LGVNFG 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,994,150
Number of Sequences: 27780
Number of extensions: 320832
Number of successful extensions: 1138
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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