Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20796
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.2  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 575 CCSTRGAPGTSTPSCATPGAT 513
           CC   G PG+S+      GA+
Sbjct: 15  CCDNLGGPGSSSAGGVVTGAS 35


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 102 PSFRYDSNLEVVEPTRGGYRMCC 34
           PS    +NL +++PT  GY++ C
Sbjct: 19  PSACGKTNLAMMKPTLPGYKIEC 41


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 532 HDGVDVPGAPRVLQHG 579
           H   DVPG  RVL++G
Sbjct: 70  HPVNDVPGVRRVLRNG 85


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 532 HDGVDVPGAPRVLQHG 579
           H   DVPG  RVL++G
Sbjct: 70  HPVNDVPGVRRVLRNG 85


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 453 PSACPRCRKRTAAD 412
           P  CP C KR   D
Sbjct: 9   PFECPECHKRFTRD 22


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 501 RAAGTHRWRPWSERAAPSACPR 436
           R+  TH+  PW +R      PR
Sbjct: 334 RSPQTHKMAPWVKRVFIHILPR 355


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 501 RAAGTHRWRPWSERAAPSACPR 436
           R+  TH+  PW +R      PR
Sbjct: 334 RSPQTHKMAPWVKRVFIHILPR 355


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 171 LVPPGQSVHVDSMCGQSDPH 112
           L+P G SVH DS    S  H
Sbjct: 378 LMPSGSSVHSDSGENNSRGH 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,935
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)