Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20795
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 31 0.24
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.2
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 3.9
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 3.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.9
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 3.9
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.9
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.8
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 6.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 6.8
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.0
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 9.0
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 30.7 bits (66), Expect = 0.24
Identities = 23/105 (21%), Positives = 54/105 (51%)
Frame = +2
Query: 68 KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 247
K P +E P V+ L+ + I +I +++ + ++ +VV+ P + ++ +I+ +
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435
Query: 248 SD*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 382
+ + +KM K+ L P PR++ +T+H+I + ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 554 LLYLSAEIFLEMLQAAWSSLICSVRAY---HFPIPSDTS 447
L L AEI LE LQ +W L C A HF I D+S
Sbjct: 3894 LFSLDAEISLEKLQNSWKRL-CQKNAILRTHFAISEDSS 3931
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 564 FHSTFVFERRNFLGNVASCLE 502
FHSTF+F+ F NV S L+
Sbjct: 531 FHSTFLFQNYEFSDNVISLLK 551
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 295 RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 423
+P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 151 KPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 328 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 414
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 591 TIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 707
TI +PS++E+ ++ + +ETN NS L + SE
Sbjct: 168 TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 317 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 424
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 325 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 492
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +1
Query: 295 RPLVDLRNPGPPQHQEHE--TQNPEHHEDAEKIVSSVKNDI---NTAEIALRQGFQEVSD 459
RPL++LR P P E + +N ++ + I+ S + N+ ++ GF++ ++
Sbjct: 597 RPLINLRQPKPLLRSEADCIIKNLQNFSTDDLIIKSNEKFTAAKNSLINVIKSGFEQ-NE 655
Query: 460 GIGKWYARTEQINELQAAC 516
I ++ +T + L C
Sbjct: 656 FINPYFLQTNYLKNLLCCC 674
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 579 KPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADGE 746
KP + + PS+ + K T+ + K + T S N I++TF + E
Sbjct: 398 KPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYE 453
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 376 AEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKK 531
A K S+ + D N +EI + + +W + TEQ+ ELQ +C S +
Sbjct: 556 ALKFSSNDQKDDNVSEIPT-ESLEYKKLRCLRWKSLTEQVVELQPSCKSSSQ 606
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 2 ETTRGPVANYIRARRTRSSIPDKVPEAEDKPLNVVENLSSEQELIDQ 142
+TT P N +TR IP + + PLN+ ++ + + I Q
Sbjct: 120 QTTNSPFINVTYILKTRVKIPSQPDFVFEYPLNLKRSIVTNADKIAQ 166
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 320 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 463
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,783
Number of Sequences: 5004
Number of extensions: 48700
Number of successful extensions: 217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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