Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20795
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7) 31 1.3
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23) 29 5.4
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014) 28 7.2
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32) 28 9.5
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 28 9.5
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
Length = 149
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 50 RSSIPDKVPEAEDKPLNVVENLSSEQELIDQ-ANTIKDIDNSLRANKKEVVDIPVKVIVE 226
+ SIP P+ + K LN VEN++ +E ++ A+ + D+ N + + K E V V+
Sbjct: 72 KDSIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVK 130
Query: 227 EIK 235
+K
Sbjct: 131 SLK 133
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 35 RARRTRSSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVK 214
R R+ ++ +KV E+ D + +EN EL +Q IK+ + L+ +KE+ + K
Sbjct: 593 RDRQIQNLSLEKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKK 647
Query: 215 VIVEEIKPSLK 247
+I E+ LK
Sbjct: 648 II--ELSDKLK 656
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 319 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIGKWYARTE 489
P PP H + E H E E+I S K+ D+ A+ L++ +++ + +G Y R
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVG--YLRYM 339
Query: 490 QINEL 504
+ +L
Sbjct: 340 EAKQL 344
>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
Length = 458
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 38 ARRTRSSIPDKVPEAEDKPLNVVENL--SSEQELIDQANTIKDIDNSLRANKKEVVDIPV 211
A R+R D +A L + E SS ++LID I+D ++S +KE + +
Sbjct: 124 AMRSRGDTTDAEIKALKTQLKMAEETRDSSRRDLIDAHRKIRDAEDSKETLRKENLHVKR 183
Query: 212 KV-IVEEIKPSLKSD*KTLKCRMKM 283
+V +E K SL+ L+ ++K+
Sbjct: 184 QVKDLEMEKQSLEKSVSDLREKVKL 208
>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
Length = 510
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 334 HQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 465
HQ H + HH D +KI S + + GF +SDG+
Sbjct: 73 HQNHHDHHHHHHHD-KKIDSKTSIATVAWMVIVSDGFHNLSDGL 115
>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
Length = 504
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 525 QENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK--SLETNFNSGLNQ 698
QEN QI LNE L + T A E QN T + +K S+ ++ NS
Sbjct: 134 QENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSVGLLTCGAQVKAPSVNSSSNSPDES 193
Query: 699 LSEGIQIVAT 728
+ E I + T
Sbjct: 194 VIEAINVFVT 203
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 101 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVD 202
V E + S++E+ D N +KD+ +S+ KK+ D
Sbjct: 302 VKEAMPSKKEIPDMRNNLKDLKSSINEVKKQTDD 335
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 541 APKFSWKCCKLPGAR*FARYERTIFQYRLTLPGSLDE 431
AP+ WKC KL G R ++ F++ L LDE
Sbjct: 74 APEQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDE 110
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 541 APKFSWKCCKLPGAR*FARYERTIFQYRLTLPGSLDE 431
AP+ WKC KL G R ++ F++ L LDE
Sbjct: 66 APEQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDE 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,085,661
Number of Sequences: 59808
Number of extensions: 348990
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -