Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20795
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi...    32   0.36 
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    31   0.64 
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    31   0.84 
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    31   0.84 
At1g12380.1 68414.m01431 expressed protein                             29   4.5  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    29   4.5  
At3g61390.2 68416.m06872 U-box domain-containing protein several...    28   5.9  
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    28   5.9  
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains...    28   5.9  
At5g01020.1 68418.m00004 protein kinase family protein contains ...    28   7.8  
At2g40435.1 68415.m04988 expressed protein                             28   7.8  
At2g28590.1 68415.m03474 protein kinase family protein contains ...    28   7.8  
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr...    28   7.8  

>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 534

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -2

Query: 279 FIRHFNVF*SLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSMSSCSLD--KFS 106
           F+R  +++  +   G+I ST+T   M    F    RL     +V +     CS D   FS
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430

Query: 105 TTFKGLSSASGTLSGMEL 52
           T  KG   A     G+EL
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448


>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 349 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 486
           T  P HH D  + VS +K+++ T   + ++ FQ V D  G+W  RT
Sbjct: 20  TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 310 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 465
           L  P      +   Q P+H E+ E +++ +KND        R G  ++S  +
Sbjct: 64  LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 506 WSSLICSVRAYHFPIPSDTSW 444
           WS+   S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +1

Query: 298 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 477
           PL  +R+         +  +PE  +D +K+++ + +  + A IAL +  +  ++G+   Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667

Query: 478 ARTEQINE 501
           AR  Q+ E
Sbjct: 668 ARAVQMKE 675


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 101 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSD*KTLKCRMK 280
           V E +++ +E + QA+T +D    LRA    V+D   K+I E+       + +    R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592

Query: 281 MRKS 292
           ++KS
Sbjct: 593 LKKS 596


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/58 (18%), Positives = 23/58 (39%)
 Frame = +1

Query: 331 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINEL 504
           + +E E     H E  +  +  + +DI         GF    + I +W+ R  + + +
Sbjct: 339 KREEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPM 396


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = +2

Query: 50  RSSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVD 202
           + SI DK+P+ E +  N++E +   +  + +A    ++D      N L     E+VD
Sbjct: 744 KKSIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVD 800


>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 59  IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 190
           I   + E +  P +V ENL  +   ID   ++KD+  +L   KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448


>At5g01020.1 68418.m00004 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 410

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -1

Query: 763 ELSAAASPSALNVATI*IPSDS*LRPLLKFVSKDLRPDSIVSKEALFCVSSTEGAAMVSA 584
           + S  A+  A ++A   +  +   RPL+  V + L P        + C ++T GAA    
Sbjct: 312 QYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQCTGDALIPCATTTAGAAFAMG 371

Query: 583 GL 578
           G+
Sbjct: 372 GV 373


>At2g40435.1 68415.m04988 expressed protein
          Length = 158

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +3

Query: 546 IQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVA 725
           IQKL + +       T    S E T  K    T+E+  K    N  SG NQ    + ++ 
Sbjct: 40  IQKLKQKVERFNQDPTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLE 99

Query: 726 TFKADG 743
            F+  G
Sbjct: 100 AFEDIG 105


>At2g28590.1 68415.m03474 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 424

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 329 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSR 508
           R+ KS K     TTK     F P K+T+   +    + S  C  V   G +    +T   
Sbjct: 6   RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63

Query: 509 QLA 517
           QLA
Sbjct: 64  QLA 66


>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GI:3757520
           from [Arabidopsis thaliana]
          Length = 226

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/96 (21%), Positives = 48/96 (50%)
 Frame = +2

Query: 62  PDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPS 241
           P + P+  DK   + + +    +  D+A  +KD+++SL+   KE+ D   K  + + K  
Sbjct: 95  PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151

Query: 242 LKSD*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 349
           LK + + +  ++K  K++       +P P+++   +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,711
Number of Sequences: 28952
Number of extensions: 251794
Number of successful extensions: 957
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)