Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20794
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.9  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   8.9  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.9  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   8.9  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  IQESAVSRTMMLIALFLFAAHVFNTNADDAY-LPPYIEACEFSNENLEQCIKEQIEKSLP 195
           I  S+V ++++L   F ++ H  N N +    L  +I     S     +C++    K LP
Sbjct: 544 IISSSVKQSLLLDGFFRWSQHCSNFNKESMLSLREFIMKALASTS---RCLRVVAAKVLP 600

Query: 196 EFTKGIPELDV 228
            F KG   LD+
Sbjct: 601 IFIKGPNNLDI 611


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 563 KECRVLNDLFRCCP*LDSIALYFNVHVYAVDEGVSFSFNL*NEKFSVGFIF 411
           +ECR    L  C P   +I  Y N        GV + +   N + ++GF+F
Sbjct: 842 EECRDQEHL--CYPETGAIESYLNQEFVQEALGVEYDYKGCNTEVNIGFLF 890


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 532 RKRSFKTRHSFIQIQDREDYVRFEKLV 612
           +KR    RHS  Q++D ED V  E +V
Sbjct: 16  KKRLLSRRHSSYQVRDEEDDVLEEFIV 42


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 216 RNTLRKLRQTLLYLFFDALFEVFIGEFAGFNVW 118
           +NTLRK  +  + +    +F   +G+F+  + W
Sbjct: 331 KNTLRKNNKDFVCVLMSEIFPSRLGQFSDIDAW 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,926
Number of Sequences: 5004
Number of extensions: 64108
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)