Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20794
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545...    35   0.081
08_02_1271 - 25762750-25764276                                         32   0.57 
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136...    30   1.7  
05_01_0299 - 2322204-2322734,2324089-2326164                           29   3.1  
05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372...    29   5.3  
04_04_0172 + 23290421-23290519,23291564-23291677,23291783-232918...    29   5.3  
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    28   7.1  
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915           28   7.1  
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120...    28   7.1  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    28   9.3  

>07_01_0714 -
           5451246-5451408,5453401-5453534,5453608-5453796,
           5454313-5454825,5455815-5456856,5457283-5457380,
           5458224-5458451
          Length = 788

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 738 LIALTTVLTICLIAGGARSSMSCCQFSLANCRVVSANSL 622
           L+    VL+ C  AGG R++  C Q SL +C ++ A  L
Sbjct: 342 LLVKRHVLSSCAAAGGLRAAAECVQISLGHCSLLEARGL 380


>08_02_1271 - 25762750-25764276
          Length = 508

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 741 LLIALTTVLTICLIAGGARSSMSCCQFSLANCRVVSANSLFP 616
           LL+A   VLT CL+A    + +  C      C V +A   FP
Sbjct: 11  LLLAAAAVLTQCLLAAAVNTPVVQCASGTTKCTVTNAFGAFP 52


>11_06_0102 +
           20112731-20112928,20113314-20113514,20113606-20113695,
           20114269-20114457,20115375-20115387,20115824-20115990,
           20117334-20117522,20118940-20119053,20120912-20121010,
           20122368-20122490,20122579-20122701,20123179-20123277,
           20124786-20124842,20125136-20125182,20125296-20125439,
           20125540-20125717,20126318-20126398,20126480-20126563,
           20126624-20126629
          Length = 733

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 554 GTPSYKYKIEKTTFDLKNLFNGNKELADTTL--QFANENWQQLMDDLAPPAIKQI 712
           GTP  +  +E+   D  +      E AD  +  QFA EN  Q   D  PPA+ ++
Sbjct: 33  GTPEDRANVERVRRDFTDHRLRRPESADLLMRMQFARENNHQRRGDRIPPAVNKL 87


>05_01_0299 - 2322204-2322734,2324089-2326164
          Length = 868

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 442 KMRSFPSASYSAVKLMLLM----KANLKFPWSPSNLSLNSFR*LPFKPCINALVNVSFNP 275
           K RSF  ++ S++K    +     A++K P  P +LS      LP  P  +A ++ + NP
Sbjct: 404 KCRSFSDSTTSSLKASSKVGKGFSASMKGPEVPPDLSFTGAA-LPSNPSFDAKLSSNLNP 462

Query: 274 LPS 266
           LP+
Sbjct: 463 LPA 465


>05_06_0260 +
           26736631-26736771,26736850-26736981,26737066-26737248,
           26737344-26737370,26737482-26737689,26737863-26737944,
           26738097-26738205,26738324-26738443,26738567-26738884
          Length = 439

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 242 GSVEGTSSSGIPFVNSGRLFSICSLMHCSRFSLENSQASMYGGRYASS 99
           G +  T  +G         F+      CS+ SLEN   +M GG+ AS+
Sbjct: 342 GEISYTDITGTSASERAVTFACSEAAPCSKLSLENVNITMAGGQNASA 389


>04_04_0172 +
           23290421-23290519,23291564-23291677,23291783-23291878,
           23291955-23292039,23292262-23292317,23292432-23292510,
           23292599-23292733,23292842-23293077,23293173-23293505
          Length = 410

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 181 EKSLPEFTKGIPELDVPSTDPVHLETLTSTA 273
           E++     K  P+ +V  TDP H ETL+S A
Sbjct: 337 EEACAVLQKAFPDHEVIFTDPFHFETLSSDA 367


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 738 LIALTTVLTICLIAGGARSSMSCCQFSLANCRVVSANSL 622
           L+     L  C+ AGG R++  C Q SL +  ++    L
Sbjct: 325 LLVKRHALAACVAAGGLRAAAECIQISLGHSSLLETRGL 363


>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
          Length = 1270

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 70  FAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLP 195
           FA H++N    DAY P  +  C  +N ++ + + ++I K +P
Sbjct: 259 FAQHLYNDKRTDAYFPIKVWVCVSTNFDVLR-LTQEILKCIP 299


>02_01_0175 -
           1198657-1198737,1199080-1199190,1199488-1199540,
           1200131-1200215,1200519-1200614,1200729-1200821,
           1201640-1201696,1201826-1201975,1202819-1202893
          Length = 266

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +2

Query: 560 PSYKYKIEKTTF----DLKNLFNGNKELADTTLQ 649
           P YK+K+E+T F     + + FNG +++   +LQ
Sbjct: 187 PEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQ 220


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 91  TNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPEL 222
           ++ADDA  P Y+E  +       +C+KE I++  P   + + EL
Sbjct: 641 SSADDALRPRYMECLDRMANIAIRCLKEDIDER-PTMAEALEEL 683


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,903
Number of Sequences: 37544
Number of extensions: 390659
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)