Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20794
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)             31   0.77 
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    29   5.5  
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_33996| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-09)                 28   9.5  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        28   9.5  

>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
          Length = 425

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 596 DLKNLFNGNKELADTTLQFANENWQQLMDDLAPPAIKQI 712
           DL+  F  NKEL D  L   N++ Q+L   +A  + KQ+
Sbjct: 153 DLEKAFTENKELRDALLAVENDDTQKLQQQVANLSAKQL 191


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 115  PPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPE 219
            PP ++ CE++ EN+E+   + ++ +      GIP+
Sbjct: 1015 PPALDPCEYNTENMEEVCFDHLKSTYQSDYTGIPQ 1049


>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 68  YSRLTCSTQTPTMHIYLHTLKPANSPMKTSNSASKN 175
           +S L C+TQTPT  + L   +   S M T+NS++++
Sbjct: 759 FSGLDCATQTPTSVLPLINERGLPSGMSTTNSSTQS 794


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +1

Query: 10  DFPI--QESAVSRTMMLIALFL--FAAHVFNTNAD-DAYLPPYIEACEFSNENLEQCI 168
           DFP   ++   ++T++L  L    F     NTN D +AYL   +E  E S  +LEQC+
Sbjct: 535 DFPYSPKDKTYNKTVLLADLKRRGFRTSGSNTNIDYEAYLDRRLEDAESSITDLEQCL 592


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 112 LPPYIEACEFSNENLEQCIK-EQIEKSLPEFT---KGIPELDVPSTDPVH 249
           LP Y EAC  S +  E C++   + + LP+     +G+P+L    + P +
Sbjct: 216 LPQYFEACHSSPQYFEACLQLPPVFRGLPQLPPVFRGLPQLPPSISRPAN 265


>SB_33996| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-09)
          Length = 537

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 324 CLLSHALMLW*MSVSTRCRRC*CLQMHWVSRRNVQFRNTL 205
           CLL   LM + +S+   C  C C  +HW+  R++QF  TL
Sbjct: 375 CLLPSCLMNYVISL---CESCDCSTVHWL--RDLQFLFTL 409


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +1

Query: 127 EACEFSNENLEQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLET 258
           +  +F+N ++E+ ++E+  +  P+ T+G  + ++   D V  E+
Sbjct: 82  DVSDFTNSDVEEFLEEEEAEKTPDVTQGASKGEIRDGDEVQTES 125


>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 166  IKEQIEKSLPEFTKGIPELDVPSTDPVHLE-TLTST 270
            I E+ E + PEF K +  L+V  T PV LE ++T T
Sbjct: 1153 IVEKPEGAAPEFIKPLKVLEVFETQPVRLECSVTGT 1188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,361,970
Number of Sequences: 59808
Number of extensions: 470487
Number of successful extensions: 1317
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)