Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20794
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    43   3e-06
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   4.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +2

Query: 524 DNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELADTTLQFANENWQQLMDDLAPPAI 703
           + NG+ +L++   + K+   K     +NLF+GNKEL +   +F NEN + L  +L     
Sbjct: 167 EKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYE 226

Query: 704 KQIVKTVVKAINKFFASV 757
           +       K  N+ F  V
Sbjct: 227 ETFSLVFTKIDNEIFNRV 244



 Score = 27.1 bits (57), Expect = 0.19
 Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 LKLTFTKALMHGL-KGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEADGKLLILQIKG 455
           L+  +    ++GL K   +K + + +D    + + ++   +   A+Y+ +GK+L+L ++G
Sbjct: 86  LRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSE-SYNPQVDFVADYKIEGKVLLLPVRG 144

Query: 456 KGDALI 473
            G + I
Sbjct: 145 AGKSNI 150


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 735 IALTTVLTICLIAGGARSSM 676
           + +TTVLT+  I+ G RSS+
Sbjct: 276 LGITTVLTMTTISTGVRSSL 295


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 255 LQMHWVSRRNVQFRNTLRKLRQTL 184
           L  HW+ R NVQ    L K   TL
Sbjct: 795 LDNHWILRSNVQQCEQLEKAPNTL 818


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 246 ASGDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSL 404
           ASGD+++    + L        G+ GS  +   L  DG  G   L  + ++++
Sbjct: 84  ASGDLSLGQKTIDLELIGTQAEGIFGSSEECVALDLDGQGGRTFLRVLLHLAM 136


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 246 ASGDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSL 404
           ASGD+++    + L        G+ GS  +   L  DG  G   L  + ++++
Sbjct: 52  ASGDLSLGQKTIDLELIGTQAEGIFGSSEECVALDLDGQGGRTFLRVLLHLAM 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,910
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)