Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20793
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   149   4e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   149   4e-37
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   1.1  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    27   2.6  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   5.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.9  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   7.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   7.9  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  149 bits (361), Expect = 4e-37
 Identities = 66/84 (78%), Positives = 74/84 (88%)
 Frame = +1

Query: 13  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 193 SSEALEAGRICCNKYLVKNCGRIS 264
           +SEALEA RIC NKYLVK  G+ S
Sbjct: 61  TSEALEAARICANKYLVKIGGKDS 84



 Score =  135 bits (326), Expect = 7e-33
 Identities = 61/84 (72%), Positives = 71/84 (84%)
 Frame = +3

Query: 255 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 434
           KD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ 
Sbjct: 82  KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTK 141

Query: 435 DRWKAQVIEALRRAKFKFPGRQKI 506
           D  +A  IEALRR ++KFPG+Q+I
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRI 165



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +2

Query: 473 CQVQVPRTSKDLVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 628
           CQ + P   + +VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  149 bits (361), Expect = 4e-37
 Identities = 66/84 (78%), Positives = 74/84 (88%)
 Frame = +1

Query: 13  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 193 SSEALEAGRICCNKYLVKNCGRIS 264
           +SEALEA RIC NKYLVK  G+ S
Sbjct: 61  TSEALEAARICANKYLVKIGGKDS 84



 Score =  134 bits (325), Expect = 9e-33
 Identities = 61/84 (72%), Positives = 71/84 (84%)
 Frame = +3

Query: 255 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 434
           KD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ 
Sbjct: 82  KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTK 141

Query: 435 DRWKAQVIEALRRAKFKFPGRQKI 506
           D  +A  IEALRR ++KFPG+Q+I
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRI 165



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +2

Query: 473 CQVQVPRTSKDLVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 628
           CQ + P   + +VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
 Frame = +3

Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQ 410
           K+L   +  ++  L P    R+     C        G     GK +G      AR+ IG+
Sbjct: 87  KQLETAEQILKRILKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGR 145

Query: 411 PIMSVRSSDRWKAQVIEALRRAKFKFPGRQKI 506
            +  +      K     AL++A F  PG+ +I
Sbjct: 146 VLFEIGGDGMRKELAEHALKQAAFHLPGKYEI 177


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 37  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 213
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 214 G 216
           G
Sbjct: 94  G 94


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 386  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHADMELILPQFFTRYLLQQIRPA 210
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+   IL  F  +   +Q    
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAND--ILHLFKKKAKSEQSNAK 1014

Query: 209  SKASELSCSYSSDT 168
            S +S +  S    T
Sbjct: 1015 SSSSSIKESKKMKT 1028


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 29/86 (33%), Positives = 40/86 (46%)
 Frame = +2

Query: 50  KINRIRNRGSVGVYLIPRSVSSIWVRRERTLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 229
           KI R+R+  SV + L   S+S  W  R   L   H   T   +  +  A RL  + VS  
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391

Query: 230 ISTS*RTAEGSVPYPHETSPFPRYPH 307
           +S    T    +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 70  SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 180
           S FC   PDPK       K  A+ DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 115  DLGKKRANVDDFPLCVHLVSDEYEQL 192
            ++ KKRA  DD    + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 94  DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 213
           DPK+R+F    KRA   +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 255 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 359
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 80  VGVYLIPRSVSSIWV 124
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,462
Number of Sequences: 5004
Number of extensions: 67043
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)