Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20793
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 84 1e-16
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 38 0.010
SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64) 33 0.22
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 29 3.6
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 29 4.7
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 28 6.2
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 8.3
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 28 8.3
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +3
Query: 354 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 503
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 37.5 bits (83), Expect = 0.010
Identities = 27/81 (33%), Positives = 38/81 (46%)
Frame = -2
Query: 632 RREVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLILDLLTSGELELGTAQSLDD 453
+R++HV G + + H GG L Q H + NP++ L+ LE TA +
Sbjct: 10 KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPT 68
Query: 452 LCLPPVTRAHGHDGLSNANTC 390
V A+ DGLSNAN C
Sbjct: 69 QTSRSVALAY--DGLSNANVC 87
>SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)
Length = 361
Score = 33.1 bits (72), Expect = 0.22
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
Frame = -2
Query: 629 REVHVPGGTARCSRHWRGGPLHAASQTHHVHTL*NPTSLILDLLTSGELELGTAQSLDDL 450
R H+P G +H P+HA S + N +++ +LT GE L + +
Sbjct: 15 RLFHLPSGNRLLVQHPPAFPIHAQSYLTRRRAVFNTMAVLHTVLTKGEQTLFFERPIRRP 74
Query: 449 CLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSAR*HFIDADNVERVKSHAD 270
+ + S N+ Y+ R + TT +L PI++ H A+++ + A+
Sbjct: 75 RFVALRQC------SLFNSWYNLEREHQITTIAALPPIATLPAGH-QTAESIVETINRAE 127
Query: 269 MELILPQFFTRYLLQQIR-PASKASELSCSYSSDTKCTHSGKSS 141
E++ + R Q+ P +A + C T+C G+ S
Sbjct: 128 SEILTAKLDPREDRAQVALPKIEALYICCDIVDRTQCLSLGEPS 171
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 208 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 92
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 40 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 219
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 220 IC 225
+C
Sbjct: 500 MC 501
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 405 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYG 265
+C V Q P AC + S GA + Y C K V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 497 TSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 357
++G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 73 SAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 311 IDADNVERVKSHADMELILPQFFTRYLLQQIRPASKASELSCSYSSDTK 165
+ A+ V+R+ SH M+ + + Y +PA+K + L C Y+ K
Sbjct: 16 LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 362 CVWQASGYCSTCSHWTTHHV 421
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 180 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 52
FVGH + ++V+N+ Q+ DT +G+ + P + +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,432,541
Number of Sequences: 59808
Number of extensions: 551016
Number of successful extensions: 1904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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