Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20791
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 46 5e-06
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 38 0.002
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 37 0.003
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 36 0.005
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 36 0.009
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 35 0.011
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 35 0.015
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 35 0.015
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 35 0.015
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 34 0.020
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.020
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 34 0.026
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 33 0.034
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 33 0.045
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 33 0.060
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 32 0.079
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 32 0.10
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.14
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 31 0.14
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.18
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.24
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 31 0.24
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 30 0.32
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 30 0.42
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 30 0.42
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 29 0.56
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 29 0.56
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 29 0.74
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 29 0.98
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 28 1.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 28 1.7
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 28 1.7
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 1.7
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 3.0
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 3.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.9
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 3.9
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 3.9
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 5.2
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 26 5.2
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 6.9
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 6.9
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 9.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 9.1
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 46.4 bits (105), Expect = 5e-06
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
+ +F G L+ +GH + I ++ + +I+S G DG V +W+ +G+ H L N
Sbjct: 411 IRIFEASSGKLLRMLQGHEDLIRTVRFNDEKIVSGGYDGTVRIWNFNTGEQHCVLHNSRN 470
Query: 689 NKV 697
++V
Sbjct: 471 SRV 473
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 37.9 bits (84), Expect = 0.002
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFIHS--IHGKNPQIISAGEDGLVMLWDTRSGKSHNK 670
W + V V++LE SL +++ GH ++ + I S G DG +MLWD
Sbjct: 170 WDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYS 229
Query: 671 LE--PHTNNKVSRPD-YWQVDWLSSSWR*LD 754
LE + N V P+ YW SS R D
Sbjct: 230 LEAKANINALVFSPNRYWLCAATGSSIRIFD 260
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 557 GHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVS---RPDYWQV 721
GH++F+ ++ + +SA D + LWD G+ ++ HT++ +S PD QV
Sbjct: 61 GHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQV 120
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 587 GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
G P +I+AG+D L+ +WD ++ LE HTNN
Sbjct: 196 GDKPYLITAGDDNLIKVWDYQTKACVRILEGHTNN 230
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHS--IHGKNPQIISAGEDGLVMLWDTRS 652
+ V++ + + + +GH N + H K P IIS EDG V +W T S
Sbjct: 210 IKVWDYQTKACVRILEGHTNNVSFAFFHSKFPIIISGSEDGTVKIWHTLS 259
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
+ ++N++ + T +GH I + + Q++SA DGLV +W SG+ L+ H
Sbjct: 531 IRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDNH 590
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFI--HSIHGKNPQIISAGEDGLVMLWD 643
++ + G I + K H + +I N + + G +GLV +WD
Sbjct: 87 IYEIPSGRRIKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWD 131
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNF--IHSIHGKNPQII--SAGEDGLVMLWDTRSGKSHNKLE 676
V V+N++ S + T ++ I ++G+ + I +AGE L++ WD +SG ++L+
Sbjct: 213 VQVWNIKKRSAVRTIPVFHSVEAIGWVNGQPEEKILYTAGEGNLILAWDWKSG---SRLD 269
Query: 677 P 679
P
Sbjct: 270 P 270
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAG--EDGLVMLWDTRSGKSHNKLE 676
+ ++NLE G L+ T GH+N + + ++SA D + +WD +G + L+
Sbjct: 641 IRIWNLESGELLQTLHGHSNLVSQVTFNQNILVSASAPPDTSLRVWDLNTGSCRDILK 698
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHS--IHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
V+ G + +GH ++S I+ Q ISAG D + +W+ SG+ L H+N
Sbjct: 601 VWKASTGVCLHVLRGHVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSN 660
Score = 29.9 bits (64), Expect = 0.42
Identities = 12/60 (20%), Positives = 28/60 (46%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
+ +++ + G LI + + H + + +++ D V +WD R+G+ HT+
Sbjct: 428 INIYDTKTGVLIRSLEEHEGDVWTFEYVGDTLVTGSTDRTVRVWDLRTGECKQVFYGHTS 487
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 35.1 bits (77), Expect = 0.011
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWD 643
V V + DG ++ + H + S++ + +I+A DG V +WD
Sbjct: 221 VLVLDTSDGKILHEFTAHKKRVKSVYPVDDYLITASSDGSVCIWD 265
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGK 658
+ +++L G + ++ +I S +IIS G DG V LWD R+GK
Sbjct: 611 IRIWDLNTGKPLMVLPSNSGYISSFVSDEHKIIS-GNDGSVKLWDVRTGK 659
Score = 32.7 bits (71), Expect = 0.060
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGK 658
+ V++L G+ +GH+ F+ ++ ++IS D + +WD +GK
Sbjct: 571 IRVWDLSTGTCKYVLEGHDAFVTLLNVFQNRLISGSADSTIRIWDLNTGK 620
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +2
Query: 542 ISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHT 685
+ T GH + + +I G ++S D + +W +G+ L H+
Sbjct: 500 VHTLIGHTDSVRTISGYGDILVSGSYDSSIRIWRVSTGECLYHLRGHS 547
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNP-QIISAGEDGLVMLWDTR 649
V V++L G++ GH +++ + + +++S G DG + LWDTR
Sbjct: 148 VKVWDLSTGAVQYDLSGHEDYVRTASWMSATRLVSGGYDGTIRLWDTR 195
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.015
Identities = 12/50 (24%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 530 DGSLISTYKGHNNFIHSIHGKNPQIISAGED-GLVMLWDTRSGKSHNKLE 676
+G+ + ++GHN ++++ + ++ +G D G + WD +SG + +L+
Sbjct: 361 EGAFMGNFEGHNAIVNTLSINSDNVMFSGADNGSMCFWDWKSGHKYQELQ 410
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V ++LE +I Y GH + ++++ H +++AG D + +WD R+ ++ + L H
Sbjct: 229 VKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWDMRTRQNVHVLSGH 288
Query: 683 TNNKVS 700
+ S
Sbjct: 289 KSTVAS 294
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGK 658
+ +++L G L T GH + ++ ++P + S GED +V WD + K
Sbjct: 187 IKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNK 238
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIHGK--NPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V+++ + GH + + S+ + +PQ+++ D + LWD +GK+ L H
Sbjct: 273 VWDMRTRQNVHVLSGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAAGKTLTTLTHH 330
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V ++N++ G+ I Y GH + I + + + S G D + +WD +GK +L H
Sbjct: 38 VRLWNVKSGACIHEYAGHGHEILDLDLVYDSTKFASCGGDKFIQVWDVNTGKVDRRLGGH 97
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQ----IISAGEDGLVMLWD 643
+++ + E G ++ +Y G N + + Q + S EDG V LWD
Sbjct: 204 IHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWD 252
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 530 DGSLISTYKGHNNFIHSIHGKNPQI---ISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVS 700
+G +TY GH +F+ S+ +P +S +D + WD ++G+S+ + H N+ +S
Sbjct: 527 EGICKATYTGHTDFVLSV-AVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVIS 585
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH-GKNPQIISAGE-DGLVMLWDTRSGKSHNKLE 676
+ +++L + + GH I+S+ N + I +G D LWD +G+ KLE
Sbjct: 384 IKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLE 441
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHS--IHGKNPQIISAGEDGLVMLWDTRSGKSHNKLE 676
+ V+ +G + TY+GH I + I+ + ++S D + LWD ++GK K E
Sbjct: 34 INVWFSHNGERLGTYEGHTGAIWTCDINKSSTLMVSGAADNTMRLWDVKTGKQLYKWE 91
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 33.5 bits (73), Expect = 0.034
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFI--HSIHGKNPQIISAGEDGLVMLWDTRSGK 658
W + V ++NL+DG+ + H+ I SI +A DG+ +WD SG+
Sbjct: 158 WDETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVLSGQ 213
Score = 29.5 bits (63), Expect = 0.56
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
+ +++ E + KGH N++ SI + ++S D V +W+ + G L H
Sbjct: 120 IRIWDFEKRCSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAH 179
Query: 683 TNNKVS 700
+ +S
Sbjct: 180 SEPIIS 185
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.1 bits (72), Expect = 0.045
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 527 EDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVS 700
E G T+ GH +FI S+ IIS +D + W S S L+ H N+ +S
Sbjct: 500 EGGICKQTFTGHKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSVIS 559
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 32.7 bits (71), Expect = 0.060
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
++++ G + +GH+ I SI + S G D + +WD RSGKS L+ H
Sbjct: 291 LWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIR 350
Query: 689 NKVS 700
V+
Sbjct: 351 QIVA 354
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLW 640
V ++N + SLI + GH + S+ G + IS+G D + LW
Sbjct: 417 VKLWNPLNCSLIKSMVGHEEKVMSVDGYGDRFISSGYDRTIKLW 460
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 32.3 bits (70), Expect = 0.079
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRS 652
+Y N + T++GH N + +I H + ++ EDG V +WD R+
Sbjct: 65 LYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRA 114
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.9 bits (69), Expect = 0.10
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 512 YVFNLEDGSLISTYKGHN--NFI--HSIHGKNPQ-IISAGEDGLVMLWDTRSGKSHNKLE 676
++++LE+ ++ Y GH NF+ GK+ ++S ED + +W SGK L
Sbjct: 408 FLWDLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVLSGSEDDKIRIWHRESGKLLATLS 467
Query: 677 PH 682
H
Sbjct: 468 GH 469
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNP----QIISAGEDGLVMLWDTR 649
+ +++ E G L++T GH ++ + NP Q SAG+D V +W +
Sbjct: 452 IRIWHRESGKLLATLSGHVKCVNYV-AYNPVDPYQFASAGDDNTVRIWSNK 501
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGK 658
+ +++ G+L+ + GH+ + I H P +S G+D V +W+ +S K
Sbjct: 35 IQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNYKSRK 86
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGKS 661
+F D + +GH+ ++ + H P I+SAG+D LV LW + K+
Sbjct: 196 LFGSTDAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKA 246
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHN 667
+ +++L G + ++ GH I S+ + + S D V +WD RSG N
Sbjct: 518 IRIWDLRIGLPVRSFIGHTAPISSLQFDSNHLYSGSYDNSVRIWDLRSGSPIN 570
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 548 TYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHT 685
TYK FI ++ + + S DGL+ +WD R G HT
Sbjct: 492 TYK-QEPFIRALDCLDAAVASGTVDGLIRIWDLRIGLPVRSFIGHT 536
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSH--NKLEPH 682
V V+++ + + KGH++++ + ++ I + D V LW+ + H N +E
Sbjct: 356 VKVWDMAGVVYLGSLKGHSDYVSCLAIQDSFIATGSMDTTVRLWNLDNDVLHKDNPVEES 415
Query: 683 TNNKVSRP 706
N+ +P
Sbjct: 416 LNSPPDQP 423
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
++++++ G I T +GH I+S+ ++ ++S G D V WD +N +
Sbjct: 529 IHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWDVFKTNYNNPVSSS 588
Query: 683 TNNKVSRP 706
V P
Sbjct: 589 LTGSVVTP 596
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHS--IHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
++++ G + + GH + + I + SA +GL+ LWD +G+ + H
Sbjct: 489 LWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRG 548
Query: 689 N 691
N
Sbjct: 549 N 549
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHS--IHGKNPQ-IISAGEDGLVMLWDTRSGKS 661
V+ NLE +L+ + H+ +H I +P +++A +DGL+ LWD + S
Sbjct: 118 VWDVNLE--ALLYDFNEHSRAVHKLDISSFHPSYVLTASQDGLIKLWDYKESSS 169
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 599 QIISAGEDGLVMLWDTRSGKSHNKLEPHT 685
Q+ S G D + +WD RS + +K E HT
Sbjct: 263 QLASGGNDNNLFVWDYRSSRPLHKFEEHT 291
Score = 29.5 bits (63), Expect = 0.56
Identities = 10/48 (20%), Positives = 28/48 (58%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRS 652
+Y++++E + + KGH+ + ++ + + S G+D +++ D R+
Sbjct: 190 IYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEVILHHDLRA 237
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 530 DGSLISTYKGHNNFIHSI-HGKNPQII-SAGEDGLVMLW 640
DG + GH +F++S+ + N Q+I S GED + +W
Sbjct: 204 DGEFLYELHGHTSFVYSLTYIHNQQLIASCGEDRTIRIW 242
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 539 LISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
L+ + HN+ + S+ S DG++ LW T G+ +L HT+
Sbjct: 168 LVKSILAHNDCVRSLCQIPGGFASCSNDGVIKLW-TSDGEFLYELHGHTS 216
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 29.9 bits (64), Expect = 0.42
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSG---KSHNKL 673
+Y ++G +++ K H + ++HG +++S D +V WD +G ++N
Sbjct: 214 LYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYWDLNTGDAISTYNCE 273
Query: 674 EPHTNNKVSRPDYWQVDWLSSS 739
+N V RP W S S
Sbjct: 274 SGQISNIVYRPSGAVNPWGSES 295
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.9 bits (64), Expect = 0.42
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 542 ISTYKGHNNFIHSIHGKNP--QIISAGEDGLVMLWDTRS 652
I T +GH++ + + ++ Q+ S G D +V +WD RS
Sbjct: 297 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 335
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 29.5 bits (63), Expect = 0.56
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHS----IHGKNPQIISAGEDGLVMLWDTRSGKSH-NKL 673
+ ++NL D SL +KGH N +I ED V +WD H K
Sbjct: 472 IRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQVFIWDLPPQHMHKTKK 531
Query: 674 EPHTNNKVS-RP 706
+ H + K S RP
Sbjct: 532 KKHEHFKASVRP 543
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
+ V++ G++ Y GH + I +IS+ D + +WD +N+ + H
Sbjct: 288 IRVWDTTTGNVKDIYSGHYESVTKILQWKSYLISSSLDQTIRVWDLEYSADNNEADDH 345
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNN-----FIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKL 673
+++LE TYKGH+ I S+ GK I + D + W+ +G+ L
Sbjct: 69 LYDLEINKTCKTYKGHSGPVTCCQIESLRKDGKVRHIYTGSWDHTIKKWNVSTGECVETL 128
Query: 674 EPHTN 688
HT+
Sbjct: 129 IGHTD 133
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 29.1 bits (62), Expect = 0.74
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 536 SLISTYKGHNNFIHSIHGKNP---QIISAGEDGLVMLWDTRSGKS 661
SL +K H++ I ++ ++ ++ISA DG V LWD R S
Sbjct: 1169 SLTDVWKEHSSEIVNVEMQSSGMRELISASSDGEVKLWDIRMNHS 1213
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/61 (19%), Positives = 32/61 (52%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
+ ++NL ++ +GH++ + + ++IS D + +W+ R+ + + L HT+
Sbjct: 295 IRLWNLATFQQVALLEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTD 354
Query: 689 N 691
+
Sbjct: 355 S 355
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 542 ISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLW 640
+ T K H+ + S+ + +++S EDG + LW
Sbjct: 505 VHTLKNHSEPVTSVALGDCEVVSGSEDGKIYLW 537
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 518 FNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWD 643
+++E + T GH + I + ++IS DG+V +W+
Sbjct: 459 WDIEKKKCVHTLFGHIEGVWEIAADHLRLISGAHDGVVKVWE 500
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGK 658
+ ++N IS GH + + + + ++S D V LW GK
Sbjct: 335 IRIWNYRTSECISILHGHTDSVLCLTFDSTLLVSGSADCTVKLWHFSGGK 384
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 530 DGSLISTYKGHNNFIHSI----HGKNPQIISAGEDGLVMLWDTRSGKSHNKLE 676
+ S +ST H +++ + + K+P + S G D +++WD G+ + E
Sbjct: 112 NASCLSTIGEHTDYVKRVSIPKYSKSPLVASGGLDKRIIVWDYNVGQEVMRFE 164
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 557 GHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
G + ++S+ N I + G + LWD S K L HT+N
Sbjct: 174 GPRSGVYSLAANNNIIANGGLQKDIQLWDCVSKKRITDLVGHTDN 218
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 458 VAISRQ*EAVCWLWRQ*VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVML 637
+ S+ + + W W+ YV + S Y + +S G+ +II+ +DG + +
Sbjct: 313 IGSSKLGQLLVWEWQSESYVLKQQ-----SHYDALSTLQYSSDGQ--RIITGADDGKIKV 365
Query: 638 WDTRSGKSHNKLEPHTN 688
WD SG HT+
Sbjct: 366 WDMNSGFCIVTFTQHTS 382
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 545 STYKGHNNFIH-SIHGKNPQIISAGEDGLVMLWDTRSGKS 661
S Y HN + KNP I+++ LV +WD R G +
Sbjct: 361 SFYDWHNGATQVKWNYKNPHILASSHGRLVRIWDDRYGSA 400
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 533 GSLISTYKGHNNFIHSIH---GKNPQIISAGEDGLVMLWD 643
G+ +T +GH ++++ G ++ + G+D +V LWD
Sbjct: 305 GTAYATLRGHKGDVNAVKWMPGSKSKLATCGDDCVVSLWD 344
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 545 STYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGK 658
+ + GH + S+H + S G+DG++ +W+ +G+
Sbjct: 373 NVFIGHKGRVRCLSVHVSGNWLASGGDDGVLRIWEVMTGR 412
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
V+ F++ L T G + H + S +D LV WD R+G L H N
Sbjct: 190 VWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLASGSKDNLVKFWDPRTGTCIATLHGHKN 249
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
++++E + + + GH N + S H + + D +WD R+G + H
Sbjct: 471 LWDVEHAAPLRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRTGGTVRVFNAH 528
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 287 F*IYRMYMFWFLYSTDNNSSTGFKIR---SRLYFECSDF 180
F IYR+ +FW S D +++T + +YF SDF
Sbjct: 1131 FRIYRLEIFWSFVSKDLSNTTNDFLEFPYKPIYFSLSDF 1169
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 602 IISAGEDGLVMLWDTRSGKS 661
++S+G+DG M+W+ +G+S
Sbjct: 276 LLSSGKDGRAMVWNVETGES 295
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +2
Query: 548 TYKGHNN-FIHS--IHGKNPQIISAGEDGLVMLWDTRS 652
TY GH I S + NP I + G DG V WD ++
Sbjct: 275 TYTGHRGKHIWSLVVSSANPIIYTGGNDGSVRSWDYKT 312
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 593 NPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
+P + ++ G V+LWD + K K+E H ++
Sbjct: 158 SPNVSNSAVSGQVILWDVINCKQITKIEAHKDS 190
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +2
Query: 512 YVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
Y+F+L+ T H + ++H ++ E+G + ++T SG K PH++
Sbjct: 319 YIFSLKSQVYNITVAQHITSL-AVHPDGNLFVAGLENGELRFFETSSGNELTKFGPHSS 376
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 636 FGILEVENHTINWNRTL 686
F L++E TI+WNRTL
Sbjct: 511 FARLDIEPSTISWNRTL 527
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +3
Query: 252 QKPKHIHSIDSKKQICSLV---STEKFLII-GTV-NEICGWDWKAVVSV 383
Q+ +H+ID+ Q+C+L+ T +F+ G + NE+ W++ +V V
Sbjct: 449 QRGSMLHNIDTGSQVCNLLWSKQTNEFISTHGFMENEVALWNYPSVSRV 497
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 612 QAKMVWLCFGILEVENHTINW 674
Q+ ++WL G+L + H +NW
Sbjct: 968 QSVLIWLSHGLLTLILHELNW 988
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 603 LFQQAKMVWLCFGILEVENHTINWNRTLITRSADLIIGK---WIGSA 734
L +++ VW +G L ++NH + TRS + W+G A
Sbjct: 959 LNERSSGVWANYGALCIQNHDVECANAAFTRSISIDPDNSQAWLGKA 1005
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 198 IEPRSYFKSSTRIIIC*IQKPKHIHSIDSKKQICSLVST 314
++P + S+ + +C +QK S+DS I + +ST
Sbjct: 1085 LKPATLIDSALDVFLCFVQKTSKFISLDSFNTILTALST 1123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,902
Number of Sequences: 5004
Number of extensions: 69327
Number of successful extensions: 270
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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