Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20791
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   9.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 680 AVPIYCVIFHF*YPKA*PNHLRLLK 606
           A  ++ VIFHF +P+   NH  +++
Sbjct: 287 ACSLFVVIFHFAHPREEFNHWTVMR 311


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 307 FQRKNSL*LVPLMKYADGTGKLLFLLNYQNL 399
           FQ KN+L    L  Y+       F + YQN+
Sbjct: 397 FQNKNNLIPSALQSYSTSMRDPAFYMLYQNI 427


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 689 NKVSRPDYWQVDWLSSSWR 745
           N  S     +VDWL + WR
Sbjct: 102 NMTSEYRLLEVDWLKNMWR 120


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/16 (31%), Positives = 14/16 (87%)
 Frame = +3

Query: 645 LEVENHTINWNRTLIT 692
           LE++N+ I+W++ +++
Sbjct: 102 LEIKNYNIDWDKCILS 117


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 590 KNPQIISAGEDGLVMLWDTR 649
           +NP+ I +G+  +VML  T+
Sbjct: 389 ENPKSIKSGDAAIVMLQPTK 408


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 590 KNPQIISAGEDGLVMLWDTR 649
           +NP+ I +G+  +VML  T+
Sbjct: 100 ENPKSIKSGDAAIVMLQPTK 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,869
Number of Sequences: 438
Number of extensions: 4807
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)