Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20791
(773 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 48 7e-06
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 42 3e-04
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 42 3e-04
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 42 5e-04
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 42 6e-04
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 40 0.001
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 40 0.001
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 40 0.002
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 39 0.004
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 39 0.004
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 38 0.006
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 38 0.007
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 38 0.007
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 37 0.013
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 37 0.013
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 37 0.013
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 36 0.023
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 36 0.039
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 36 0.039
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 36 0.039
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 36 0.039
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 36 0.039
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 36 0.039
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 35 0.052
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 35 0.052
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 35 0.052
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 35 0.052
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 35 0.052
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 34 0.091
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 34 0.091
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 34 0.091
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 34 0.091
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 34 0.091
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 34 0.091
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 34 0.091
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 34 0.091
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 34 0.091
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 34 0.091
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 34 0.12
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 34 0.12
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 34 0.12
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 33 0.21
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 33 0.21
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 33 0.21
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 33 0.28
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 32 0.37
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 31 0.64
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 31 0.64
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 31 0.85
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 31 0.85
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 31 1.1
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 31 1.1
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 31 1.1
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 30 2.0
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 2.0
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 2.0
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 29 2.6
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 2.6
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 2.6
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 3.4
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 29 3.4
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 29 4.5
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 4.5
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 4.5
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 4.5
At1g65030.1 68414.m07371 transducin family protein / WD-40 repea... 29 4.5
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 4.5
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 4.5
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 6.0
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 28 6.0
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 28 6.0
At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ... 28 6.0
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 7.9
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 28 7.9
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 28 7.9
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 28 7.9
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 28 7.9
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 28 7.9
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 28 7.9
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 28 7.9
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 28 7.9
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 48.0 bits (109), Expect = 7e-06
Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +2
Query: 512 YVFNLEDGSLISTYKGHNNFIHSIHGKN--PQIISAGEDGLVMLWDTRSGK 658
Y +++E G + T+KGH++++H++ ++ QI++ EDG +WD ++GK
Sbjct: 184 YCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGK 234
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGH--NNFIHSIHGKNPQI-ISAGEDGLVMLWDTRSG 655
+ V+N DGSL+ + GH + ++ +H NP+I +SAG DG ++WD G
Sbjct: 568 ICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWDIWEG 619
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH-----GKNPQIISAGEDGLVMLWDTRSGK 658
+ V+ L DG +S +GH + +I G Q++S+ +DG +WD R +
Sbjct: 311 IRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQ 365
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQ---IISAGEDGLVMLWDTRSGKSHN 667
W + V V+NL + L ST GH ++ ++ +P S G+DG+V+LWD GK
Sbjct: 172 WDKTVKVWNLSNCKLRSTLAGHTGYVSTV-AVSPDGSLCASGGKDGVVLLWDLAEGKKLY 230
Query: 668 KLEPHT 685
LE ++
Sbjct: 231 SLEANS 236
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 557 GHNNFIHSIH-GKNPQIISAGE-DGLVMLWDTRSGKSHNKLEPHTNNKVS 700
GH++F+ + + Q +G DG + LWD +G S + HT + +S
Sbjct: 61 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS 110
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQ---IISAGEDGLVMLWDTRSGKSHN 667
W + V V+NL++ L +T GH+ +++++ +P S G+DG+++LWD GK
Sbjct: 171 WDKTVKVWNLQNCKLRNTLAGHSGYLNTV-AVSPDGSLCASGGKDGVILLWDLAEGKKLY 229
Query: 668 KLE 676
LE
Sbjct: 230 SLE 232
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 557 GHNNFIHSIH-GKNPQIISAGE-DGLVMLWDTRSGKSHNKLEPHTNNKVS 700
GH++F+ + + Q +G DG + LWD +G+S + HT + +S
Sbjct: 61 GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLS 110
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDT 646
W + +++L G + GH + S+ N QI+SA D + LW+T
Sbjct: 83 WDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNT 134
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHN--NFIHSIHGKNPQI-ISAGEDGLVMLWDTRSG 655
+ V+N DGSL+ GH+ +++ +H NP+I +SAG DG ++WD G
Sbjct: 621 ICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEG 672
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI-----HGKNPQIISAGEDGLVMLWDTR 649
+ V+ L DG IS +GH + +I Q++S+ +DG +WD R
Sbjct: 371 IRVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDAR 422
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIHGKNPQ---IISAGEDGLVMLWDTRSGKSHNKLEPHT 685
++++E GSLI T GH N+ ++ NPQ I+S D V +WD +GK L H+
Sbjct: 97 LWDVETGSLIKTLIGHTNYAFCVNF-NPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHS 155
Query: 686 N 688
+
Sbjct: 156 D 156
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIHG-----KNPQIISAGEDGLVMLWDTRSGKSHNKLEP 679
++N+ + TY GH N + I +I+S ED V +W+ S K KLE
Sbjct: 224 LWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEG 283
Query: 680 HT 685
HT
Sbjct: 284 HT 285
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 542 ISTYKGHNNFIHSIHGKNPQ--IISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
+ + GH N I + + I+SA +D + LWD +G L HTN
Sbjct: 64 VQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTN 114
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 551 YKGHNNFIHSI--HGKNPQII-SAGEDGLVMLWDTRSGKSHNKLEPH 682
Y+GH + I + H KN + SAGEDG +++WDTR+ + ++++ H
Sbjct: 213 YEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVH 259
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQ---IISAGEDGLVMLWDTRSGKSHN 667
W + V V+NL++ L ++ GH+ +++++ +P S G+DG+++LWD GK
Sbjct: 171 WDKTVKVWNLQNCKLRNSLVGHSGYLNTV-AVSPDGSLCASGGKDGVILLWDLAEGKKLY 229
Query: 668 KLE 676
LE
Sbjct: 230 SLE 232
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 557 GHNNFIHSIH-GKNPQIISAGE-DGLVMLWDTRSGKSHNKLEPHTNNKVS 700
GH++F+ + + Q +G DG + LWD +G++ + HT + +S
Sbjct: 61 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLS 110
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDT 646
W + +++L G + GH + S+ N QI+SA D + LW+T
Sbjct: 83 WDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNT 134
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
+ ++N G LI TYK H + +H N + S G D V WD +G+ K H
Sbjct: 42 IRLWNPHRGILIKTYKSHGREVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGH 101
Score = 34.7 bits (76), Expect = 0.069
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +2
Query: 449 ELHVAISRQ*EAVCWLWRQ*VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGED 622
++HV C RQ VY +++ G +I ++GH+ ++++ + + ++SAG D
Sbjct: 65 DVHVTSDNAKFCSCGGDRQ-VYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFD 123
Query: 623 GLVMLWDTRS 652
+ +WD RS
Sbjct: 124 RSLRVWDCRS 133
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 533 GSLISTYKGH--NNFIHS--IHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
G L+ YKGH +F + + +I EDGLV WD K +K H
Sbjct: 216 GELLQVYKGHISKSFKTDCCLTNSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAH 269
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
++++ I TYKGH ++ + I+S GED +V +WD +GK ++ + H
Sbjct: 220 IWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSH-E 278
Query: 689 NKVSRPDYWQVDWL 730
K+ D+ ++L
Sbjct: 279 GKIQSLDFHPHEFL 292
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 557 GHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVSRPDYWQVDWL 730
GH + S+ H ++S G+D LV LWDTRSG+ L H N +S +WL
Sbjct: 266 GHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWL 325
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 503 Q*VYVFNLEDGSLISTYKGHNNFIHSIH-GKNPQ-IISAGEDGLVMLWDTRSGKSHNKLE 676
Q V +++ G + + GH N + S+ +N +++A +D ++ L+D R+ K
Sbjct: 290 QLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFR 349
Query: 677 PHTNNKVS 700
HT + S
Sbjct: 350 GHTKDVTS 357
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 521 NLEDGSLISTYKGHNNFIHSIHG-----KNPQIISAGEDGLVMLWDTRSGKSHNKLEPHT 685
N G + Y GH N + I I+S ED V LWD ++ +LE HT
Sbjct: 241 NYATGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHT 300
Query: 686 NNKVSRPDYWQVDWLSSSWR*LD 754
+ +S + + +SSS LD
Sbjct: 301 DAVISVSCHPVQNEISSSGNHLD 323
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 542 ISTYKGHNNFIHSIHGKNPQ--IISAGEDGLVMLWDTRSGKSHNKLEPHT 685
+ +GH NF+ ++ P I+S D + +W+ ++GK ++ H+
Sbjct: 121 LKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHS 170
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQ--IISAGEDGLVMLWDTRSG 655
+ ++ ++ G + K H+ I S+H I+SA DG +WD + G
Sbjct: 152 IRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEG 202
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 554 KGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
KGH N I +H QI+SA D V WD +GK K+ H++
Sbjct: 93 KGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSS 139
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKN---PQIISAGEDGLVMLWDTR 649
V +++E G I H++F++S P IIS +DG LWD R
Sbjct: 120 VRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMR 169
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
++++ I TYKGH ++ + ++S GED +V +WD +GK + + H
Sbjct: 127 IWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSH 184
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
++++ I TYKGH ++ + ++S GED +V +WD +GK + + H
Sbjct: 127 IWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSH 184
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFI--HSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V ++ + DGS + T++GH + + S Q +S G DGL+ LW+ + + + H
Sbjct: 565 VKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSECIATYDQH 624
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
+ ++L+DGSL+ T GH + + ++ N + S DG V LW L T
Sbjct: 609 IKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVLGEETP 668
Query: 689 NKVSRPD 709
+ R D
Sbjct: 669 GIIWRDD 675
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 602 IISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVSRPDYWQ 718
++SA DG +MLWD R+ + ++ H N+KV D+W+
Sbjct: 374 LLSASYDGKIMLWDLRTAWPLSVIDTH-NDKVLSADWWK 411
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +2
Query: 551 YKGHNNFIHSI--HGKNPQII-SAGEDGLVMLWDTRSGKSHNKLEPH 682
Y+GH + I + H KN I SAG+D +++WD R+ + ++++ H
Sbjct: 214 YEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQMQHQVKVH 260
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIHGK--NPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V+++ I GH+N + S+ + +PQ+++ D + WD R GK+ + L H
Sbjct: 286 VWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHH 343
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V ++LE +I +Y GH + ++ ++H +++ G D + +WD R+ L H
Sbjct: 242 VKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGH 301
Query: 683 TNNKVS 700
N S
Sbjct: 302 DNTVCS 307
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 554 KGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
KGH ++++ + ++S G + ++ +WD R+G KL HT+N
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDN 257
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 554 KGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
KGH ++++ + ++S G + ++ +WD R+G KL HT+N
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDN 257
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
+ V+N + + T GH ++I ++ H +NP I+SA +D + +W+ +S + L H
Sbjct: 75 IKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGH 134
Query: 683 TN 688
+
Sbjct: 135 NH 136
Score = 34.3 bits (75), Expect = 0.091
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 503 Q*VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWD 643
Q + ++N + + IS GHN+++ S H K ++SA D V +WD
Sbjct: 115 QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 578 SIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
S H K P I+++ G++ LWD R G ++ + H
Sbjct: 16 SFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEH 50
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 542 ISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWD 643
+ T +GH N + S+ H K I+S ED + +WD
Sbjct: 241 VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKN--PQIISAGEDGLVMLWDTRS 652
+ +++ G+LI + H + +H N P +S G+D + +W+ ++
Sbjct: 33 IQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKT 82
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSG 655
+ V+N + ++ H+++I ++H P ++S+ +D L+ LWD +G
Sbjct: 81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENG 131
Score = 34.3 bits (75), Expect = 0.091
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
V++ + S + T GH + + ++ H + P II+ EDG V +W + + N L N
Sbjct: 213 VWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL----N 268
Query: 689 NKVSRPDYWQVDWLSSSWR 745
+ R W + ++ SS R
Sbjct: 269 YGLER--VWAIGYIKSSRR 285
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 554 KGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
KG N + G P +I+ +D +WD ++ L+ HT+N
Sbjct: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHN 231
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSG 655
+ V+N + ++ H+++I ++H P ++S+ +D L+ LWD +G
Sbjct: 81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENG 131
Score = 34.3 bits (75), Expect = 0.091
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
V++ + S + T GH + + ++ H + P II+ EDG V +W + + N L N
Sbjct: 213 VWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL----N 268
Query: 689 NKVSRPDYWQVDWLSSSWR 745
+ R W + ++ SS R
Sbjct: 269 YGLER--VWAIGYIKSSRR 285
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 554 KGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
KG N + G P +I+ +D +WD ++ L+ HT+N
Sbjct: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHN 231
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSG 655
+ V+N + ++ H+++I ++H P ++S+ +D L+ LWD +G
Sbjct: 81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENG 131
Score = 34.3 bits (75), Expect = 0.091
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
V++ + S + T GH + + ++ H + P II+ EDG V +W + + N L N
Sbjct: 213 VWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL----N 268
Query: 689 NKVSRPDYWQVDWLSSSWR 745
+ R W + ++ SS R
Sbjct: 269 YGLER--VWAIGYIKSSRR 285
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 554 KGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
KG N + G P +I+ +D +WD ++ L+ HT+N
Sbjct: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHN 231
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
++++ I TYKGH+ I +I ++S G D +V +WD +GK ++ + H
Sbjct: 126 IWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFH 183
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 35.1 bits (77), Expect = 0.052
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
V++ + S + T +GH + + ++ H + P II+ EDG V +W + + N L N
Sbjct: 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL----N 268
Query: 689 NKVSRPDYWQVDWLSSSWR 745
+ R W + ++ SS R
Sbjct: 269 YGLER--VWAIGYIKSSRR 285
Score = 34.7 bits (76), Expect = 0.069
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSG 655
+ V+N + ++ H+++I ++H P ++S+ +D L+ LWD G
Sbjct: 81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 554 KGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
KG N + G P +I+ +D +WD ++ LE HT+N
Sbjct: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 527 EDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGK 658
++G + TY+GHN + + + ++I+ D LWD +SGK
Sbjct: 40 DNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGK 85
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 593 NPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNK 694
N I+S GED ++ +WD +GK + + +K
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHK 193
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 527 EDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGK 658
++G + TY+GHN + + + ++I+ D LWD +SGK
Sbjct: 40 DNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGK 85
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 593 NPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNK 694
N I+S GED ++ +WD +GK + + +K
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHK 193
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 527 EDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGK 658
++G + TY+GHN + + + ++I+ D LWD +SGK
Sbjct: 40 DNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGK 85
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 593 NPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNK 694
N I+S GED ++ +WD +GK + + +K
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHK 193
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 509 VYVFNLEDGSL-ISTYKGHNNFIHSI-HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V +F++E+ + ++ +KGH++ +HS+ N +++++ + V LW SG ++L +
Sbjct: 656 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELS-N 714
Query: 683 TNNK 694
+ NK
Sbjct: 715 SGNK 718
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 509 VYVFNLEDGSL-ISTYKGHNNFIHSI-HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V +F++E+ + ++ +KGH++ +HS+ N +++++ + V LW SG ++L +
Sbjct: 658 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELS-N 716
Query: 683 TNNK 694
+ NK
Sbjct: 717 SGNK 720
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 509 VYVFNLEDGSL-ISTYKGHNNFIHSI-HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V +F++E+ + ++ +KGH++ +HS+ N +++++ + V LW SG ++L +
Sbjct: 658 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELS-N 716
Query: 683 TNNK 694
+ NK
Sbjct: 717 SGNK 720
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 509 VYVFNLEDGSL-ISTYKGHNNFIHSI-HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V +F++E+ + ++ +KGH++ +HS+ N +++++ + V LW SG ++L +
Sbjct: 658 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELS-N 716
Query: 683 TNNK 694
+ NK
Sbjct: 717 SGNK 720
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 509 VYVFNLEDGSL-ISTYKGHNNFIHSI-HGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V +F++E+ + ++ +KGH++ +HS+ N +++++ + V LW SG ++L +
Sbjct: 658 VSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELS-N 716
Query: 683 TNNK 694
+ NK
Sbjct: 717 SGNK 720
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 521 NLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
+L L +T KGH + +I +I+S +D V++WD ++ + +L+ H
Sbjct: 885 SLRGSELRATLKGHTGTVRAISSDRGKIVSGSDDLSVIVWDKQTTQLLEELKGH 938
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 602 IISAGEDGLVMLWDTRSGKSHNKLEPHT 685
+ +AG D + +WD RSGK +KL+ HT
Sbjct: 995 LAAAGRDTVANIWDIRSGKQMHKLKGHT 1022
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHG-KNPQIISAGEDGLVMLWDTRS 652
V V++ + L+ KGH++ + + ++++A DG V +WD R+
Sbjct: 921 VIVWDKQTTQLLEELKGHDSQVSCVKMLSGERVLTAAHDGTVKMWDVRT 969
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
++++ G + KGH +I SI +I+ +D +W G L H
Sbjct: 1006 IWDIRSGKQMHKLKGHTKWIRSIRMVEDTLITGSDDWTARVWSVSRGSCDAVLACH 1061
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 34.3 bits (75), Expect = 0.091
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIHGK--NPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V++ I TYKGH I +I ++S G D +V +WD +GK ++ + H
Sbjct: 75 VWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCH 132
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +2
Query: 494 LWRQ*VYVFNLE-DGSLISTYKGHNN---FIHSIHG--KNPQIISAGEDGLVMLWDTRSG 655
L Q + ++N+E D ++S YKGH I S G K I S ED V +W +G
Sbjct: 462 LLNQEIRLWNIEGDPKIVSRYKGHKRSRFIIRSCFGGYKQAFIASGSEDSQVYIWHRSTG 521
Query: 656 KSHNKLEPH 682
K +L H
Sbjct: 522 KLIVELPGH 530
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSG 655
+ V+N I ++ H ++I ++H P ++S+ +D L+ LWD G
Sbjct: 81 IRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSGKSHNKL 673
V++ + S + T +GH + + ++ H + P II+ EDG V +W + + N L
Sbjct: 213 VWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 554 KGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNN 691
KG N + G P +I+ +D +WD ++ LE HT+N
Sbjct: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 503 Q*VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWD 643
Q + ++N + + +S GHN+++ S H K ++SA D V +WD
Sbjct: 115 QTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 578 SIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
S H K P I+++ G++ LWD R G ++ + H
Sbjct: 16 SFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEH 50
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 542 ISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWD 643
+ T +GH N + S+ H K I+S ED + +WD
Sbjct: 241 VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKN--PQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
+ +++ G+LI + H + +H N P +S G+D + +W+ ++ + L H
Sbjct: 33 IQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGH 92
Query: 683 TNNKVSRPDYWQVDWLSSS 739
+ + + + W+ S+
Sbjct: 93 LDYIRTVQFHHEYPWIVSA 111
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +2
Query: 539 LISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSH------NKLEPHTN 688
++ TY+GH + + G Q+ S G D +V +WD S+ ++LE HT+
Sbjct: 258 IVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTS 315
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +2
Query: 539 LISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSH------NKLEPHTN 688
++ TY+GH + + G Q+ S G D +V +WD S+ ++LE HT+
Sbjct: 248 IVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTS 305
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGK 658
V+ ++G + TY+GH+ + I + ++I+ D LWD +SGK
Sbjct: 63 VWFADNGERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGK 112
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 593 NPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNK 694
N I+S GED + +WD +GK + + +K
Sbjct: 187 NQTIVSGGEDAAIRIWDAETGKLLKQSDEEVGHK 220
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGH---NNFIHSIHGKNPQIISAG-EDGLVMLWDTRSGK 658
++++EDG +I TY+GH NF+ +N + G E+ V ++D R GK
Sbjct: 138 LWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGK 189
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 548 TYKGHNNFIHSIHGKNP-QIISAGEDGLVMLWDTRSGKSHNKLEPHTNNK 694
T +GH + + + +++AG DG + LW G+ E H NN+
Sbjct: 108 TLQGHTKTVSYVRFLDGGTVVTAGTDGCLKLWSVEDGRVIRTYEGHVNNR 157
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTN 688
V++L G I ++GH + S++ + S GED +WD R KS + H N
Sbjct: 407 VWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHAN 466
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 515 VFNLEDGSLISTYKGHNNFIHSIHGKNPQIISA--GEDGLVMLWDTRSGKS 661
++++ G+ + +GH+ ++ I + ++A G D L +WD R+G+S
Sbjct: 365 LWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRS 415
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 497 WRQ*VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGK 658
W + + V+ L D + + K H++ I+ + + ++ SA DG V +W K
Sbjct: 192 WDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYSASADGKVKIWGKEKRK 245
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIH--SIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V ++LE +I +Y GH + ++ ++H +++ G D + +WD R+ K + PH
Sbjct: 236 VKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRT-KMQIFVLPH 294
Query: 683 TNNKVS 700
++ S
Sbjct: 295 DSDVFS 300
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 560 HNNFIHSIHGK--NPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
H++ + S+ + +PQ+I+ D + WD R GKS + H
Sbjct: 294 HDSDVFSVLARPTDPQVITGSHDSTIKFWDLRYGKSMATITNH 336
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 536 SLISTYKGHNNFIHSIHGKNP--QIISAGEDGLVMLWDTRSGKSHN 667
S++ TY GH + + ++ S G D +V +WD RS S N
Sbjct: 209 SIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWDHRSVASSN 254
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
Pfam PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 581 IHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEP 679
+ G PQ+I+ G D + +WDT + K +++P
Sbjct: 215 VSGSAPQLITIGADKTLAIWDTMTFKELRRIKP 247
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 602 IISAGEDGLVMLWDTRSGKSHNKLEPHTNNK 694
++S G DGL++LW G +L P + K
Sbjct: 150 LVSGGSDGLLVLWSADHGADSRELVPKLSLK 180
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIHGKNPQ---IISAGEDGLVMLWDTRSGKSHNKLEP 679
V +++++ G + + GH + + S+ +P + S EDG +M+WD + + L
Sbjct: 523 VRLWDVQTGECVRIFIGHRSMVLSL-AMSPDGRYMASGDEDGTIMMWDLSTARCITPLMG 581
Query: 680 HTN 688
H +
Sbjct: 582 HNS 584
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 551 YKGHNNFIHSIH---GKNPQIISAGEDGLVMLWDTRSGKS 661
Y GH + + + + S G+D +MLWD R+G S
Sbjct: 277 YNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTS 316
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 503 Q*VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGE-DGLVMLWDTRSGKSHNKL 673
Q + V+++E+ GH + S+ H N ++ +G DG LWD R S +K
Sbjct: 150 QTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDLRCKSSSHKE 209
Query: 674 E 676
E
Sbjct: 210 E 210
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 581 IHGKNPQIISAGEDGLVMLWDTRSGKSHNKLE---PHTNNKVSR 703
+HG + S + G V LWD RSGK LE P T+ +VS+
Sbjct: 154 LHGDQTILSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSQ 197
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 YNDVNCMWLSQDSEKLYAGCGDNK 509
Y DVNC+ S DS+ L G DNK
Sbjct: 349 YFDVNCVTYSPDSQLLATGADDNK 372
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 YNDVNCMWLSQDSEKLYAGCGDNK 509
Y DVNC+ S DS+ L G DNK
Sbjct: 389 YFDVNCVTYSPDSQLLATGADDNK 412
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLI-STYKGHNNFIH-SIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
V +++ G+LI S Y N + ++ N +I+A + +WD SG+ + L H
Sbjct: 255 VKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGRVRHTLTGH 314
Query: 683 TN 688
T+
Sbjct: 315 TD 316
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAG-EDGLVMLWDTRSGKSHNKLEP 679
V V+++ L++ K H + SI +P ++++G +DG V LW G S ++
Sbjct: 558 VQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 617
Query: 680 HTN 688
N
Sbjct: 618 KAN 620
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSIH--GKNPQIISAG-EDGLVMLWDTRSGKSHNKLEP 679
V V+++ L++ K H + SI +P ++++G +DG V LW G S ++
Sbjct: 558 VQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 617
Query: 680 HTN 688
N
Sbjct: 618 KAN 620
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 542 ISTYKGHNNFIHSIH-GKNPQ---IISAGEDGLVMLWDTRSGK--SHNKLEPHTNNKVSR 703
+ TY+GH N I G +P I+S G+D +W +SG+ S NK +N V
Sbjct: 379 VQTYEGHVNSHTPIEFGIDPSERFILSGGDDCYTRIWSIKSGQLMSENKF----SNSVPS 434
Query: 704 PDYWQVD 724
W D
Sbjct: 435 VVCWSAD 441
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI--HGKNPQIISAGEDGLVMLWDTRSG 655
+ + N DGS++ KGH + + H + S G V+ W+ ++G
Sbjct: 128 IKLINTFDGSIVRVLKGHKGPVTGLDFHPNGELLASIDTTGTVLCWELQNG 178
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 557 GHNNFIHSIHGKNPQIISAG-EDGLVMLWDTRSGKSHNKLEPH 682
G F + + +N I+++G ED V +WD +GK +E H
Sbjct: 214 GQTLFFLTFNWENRNIVASGSEDKKVKVWDVATGKCKVTMEHH 256
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Frame = +2
Query: 527 EDGSLISTYKGHNNF----IHSIHGKNPQIISAGE--------DGLVMLWDTRSGK 658
EDG+ +N +HS+HGK ISAG+ G V +WD ++GK
Sbjct: 423 EDGAFFYWVSSDSNLRCQQLHSLHGKTVVSISAGKYWASAVTSTGEVYMWDGKNGK 478
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Frame = +2
Query: 527 EDGSLISTYKGHNNF----IHSIHGKNPQIISAGE--------DGLVMLWDTRSGK 658
EDG+ +N +HS+HGK ISAG+ G V +WD ++GK
Sbjct: 420 EDGAFFYWVSSDSNLRCQQLHSLHGKTVVSISAGKYWASAVTSTGEVYMWDGKNGK 475
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +2
Query: 542 ISTYKGHNNFIHSIHG-KNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNK 694
+ + GH + + N ++ SA D + LWD + HTN K
Sbjct: 542 LHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEK 593
>At1g65030.1 68414.m07371 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to PAK/PLC-interacting protein 1 (GI:14211689)
[Homo sapiens]
Length = 345
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 587 GKNPQIISAGEDGLVMLWDTRSGKSHNKLE 676
G++ + + GED + WDT SGK +E
Sbjct: 222 GESGTLFTGGEDRAITAWDTNSGKLAYSIE 251
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 590 KNPQII-SAGEDGLVMLWDTR-SGKSHNKLEPHTNNK 694
++P +I SA DG++ +WD R + K + K TN K
Sbjct: 274 EDPYLIGSASSDGIIRVWDVRMAAKENTKPLAETNTK 310
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 557 GHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
G N+ S K +I+ G+D + +WD +G + E H
Sbjct: 464 GVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGH 505
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 557 GHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPH 682
G N+ S K +I+ G+D + +WD +G + E H
Sbjct: 464 GVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGH 505
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 602 IISAGEDGLVMLWDTRSGKSHNKLEPH 682
+I+ G+D L+ +WD SG+ H E H
Sbjct: 469 VITCGDDKLIKVWDV-SGRKHFTFEGH 494
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 608 SAGEDGLVMLWDTRSGKSHNKLEP 679
SA +DG +M WD SGK+ + P
Sbjct: 178 SASKDGTIMHWDVSSGKTDKYIWP 201
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHNNFIHSI-----HGKNPQII-SAGEDGLVMLWDTRSGKSHNK 670
V +++ G KGH++ ++ I +P ++ S DG + WDTRS + ++
Sbjct: 65 VKLYSPVTGQYYGECKGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSR 124
Query: 671 LEPHTNNKV 697
++ + ++
Sbjct: 125 IDTGNDQEI 133
>At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3)
identical to papain-like cysteine peptidase XBCP3
GI:14600257 from [Arabidopsis thaliana]; contains Pfam
profiles PF00112: Papain family cysteine protease and
PF00396: Granulin
Length = 437
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 684 VCGSNLLCDFPLLVSQSITKPSSPAEIICGFF 589
VCG N+L +P+ + PS P C F
Sbjct: 322 VCGINMLASYPIKTHPNPPPPSPPGPTKCNLF 353
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 602 IISAGEDGLVMLWDTRSGKS 661
+++AG+DG V LWDT +G+S
Sbjct: 194 LVTAGDDGTVHLWDT-TGRS 212
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 524 LEDG-SLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVS 700
L DG ++ + G + +++S+ DG + +W R + L PH + VS
Sbjct: 310 LIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVS 369
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 524 LEDG-SLISTYKGHNNFIHSIHGKNPQIISAGEDGLVMLWDTRSGKSHNKLEPHTNNKVS 700
L DG ++ + G + +++S+ DG + +W R + L PH + VS
Sbjct: 345 LIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVS 404
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 509 VYVFNLEDGSLISTYKGHN---NFIHSIHGKNPQIISAGEDGLVMLWD 643
V VF++++ + T + H+ F+ ++S G+DG+V WD
Sbjct: 117 VQVFDIKERMALRTLRSHSAPARFVKYPVQDKLHLVSGGDDGVVKYWD 164
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 521 NLEDGSLISTYKG-HNNFIHSIHGKNPQIISAGED-GLVMLWDTRSGKSHNKLEPH 682
++E G+ ++ + H + ++++ I++G+D G V +WDTR ++ H
Sbjct: 22 DVETGAQVAHLENAHEDAVNTLINVTETTIASGDDKGCVKIWDTRQRSCSHEFNAH 77
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 521 NLEDGSLISTYKG-HNNFIHSIHGKNPQIISAGED-GLVMLWDTRSGKSHNKLEPH 682
++E G+ ++ + H + ++++ I++G+D G V +WDTR ++ H
Sbjct: 79 DVETGAQVAHLENAHEDAVNTLINVTETTIASGDDKGCVKIWDTRQRSCSHEFNAH 134
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 504 CLHNQHTASHCLEIATCSSHRCSPKKF 424
C+ N + +HC + TCS RC KKF
Sbjct: 319 CVKNHYKRTHCDKSFTCS--RCHTKKF 343
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 504 CLHNQHTASHCLEIATCSSHRCSPKKF 424
C+ N + +HC + TCS RC KKF
Sbjct: 319 CVKNHYKRTHCDKSFTCS--RCHTKKF 343
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 397 GFDNLTETTAFQSHPHISLTVP 332
G D LT+T + S PHI +T P
Sbjct: 163 GMDMLTQTMSLVSRPHIVITTP 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,672
Number of Sequences: 28952
Number of extensions: 346666
Number of successful extensions: 1097
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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