Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20790
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    27   3.3  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   5.8  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   7.7  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.7  

>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 231 RQLQRVPPDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFF 365
           +++ RV   + K  +V + T DDTV WI   ++ +G    D P F
Sbjct: 122 KEIYRVLKPNGKLGLVWN-TRDDTVPWIEKVSKILGRYRKDAPSF 165


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 42  PLRAEHVRHLLHPDDLSAH 98
           PL+A +V   +HP  LSAH
Sbjct: 255 PLKAHYVLRSVHPSPLSAH 273


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 84  DLSAHPPRRLPSLQERKRFSHIRKLLLQSFIRRVRRA 194
           +L     ++  SL+  K     RKLLLQS I R+ +A
Sbjct: 678 NLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKA 714


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 193 PEIENAANVYHTLVSCREYHRMIGSTKWWSIGPKMIQFR 309
           P+ E   N YH L S  +     G   W SI  K I++R
Sbjct: 231 PDSEEVQNEYHRLKSSIDEEFAGGPCSWASIFGKDIRYR 269


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +3

Query: 216  CLPHPRQLQRVPPDDWKYKVV-----VDWTEDDTVSWIVDTAQSIGIS-EYDIPFFNYRV 377
            CL  P  ++++ P +W  KV          + DT   + D   SI ++ E  I FF  ++
Sbjct: 898  CLVSPEAMKKLTPQEWSQKVCHSIGGRSGGKGDTCQGVGDKPLSIDVAVEEAIEFFQGKL 957

Query: 378  T 380
            T
Sbjct: 958  T 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,316
Number of Sequences: 5004
Number of extensions: 59822
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)