Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20790
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          32   0.38 
SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)                  29   2.7  
SB_160| Best HMM Match : PRP1_N (HMM E-Value=2.7)                      29   4.6  
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_9673| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49)                    28   8.1  
SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)               28   8.1  
SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71)                    28   8.1  

>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 285 WTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFVQ 422
           WT++    WI+   +   + + DI  FN  + G DL  + R+DF++
Sbjct: 168 WTKEHVRQWILWAIKEFSLKDIDIDRFN--IDGRDLCRLTRDDFMK 211


>SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)
          Length = 387

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 288 TEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFVQ 422
           T  + V+ I +  Q++  + ++IP FN+    L++  ++  DFV+
Sbjct: 148 TNAELVNTIANNYQNLWFNNWEIPNFNFEEIKLEIVEIRSPDFVE 192


>SB_160| Best HMM Match : PRP1_N (HMM E-Value=2.7)
          Length = 257

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
 Frame = +3

Query: 276 VVDWTEDDTVSWIV--DTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFVQRMAHPSMDP 449
           V+   E+   SW+   D+      SE+D PFF++    +D   +  E  +  +       
Sbjct: 151 VISLDEEKPPSWLKRRDSFHDTSDSEFDEPFFDFEGDDMDAEEIYSEALMDELKK----- 205

Query: 450 VASRKIGDNIFDRLHTR-LNEICSDNLQYLDMRKVSLTITSSR 575
              R I D++   L    +N  C   LQ  + + + L+ T+++
Sbjct: 206 -LQRGIVDDLKKNLQDMDMNNDCLQKLQAEEAKAIRLSQTATK 247


>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 26.2 bits (55), Expect(2) = 5.4
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -1

Query: 447 GPCLDGPSV-GRSLHASCSVDPSQSLCS*RTVYRIH*YLCSG---LCRLSTKLYHLRSNR 280
           GPC+DGP + G  +   C   P  S    +T+ ++          L R +TKL  LR  R
Sbjct: 213 GPCVDGPCIDGPCVDGPCVDGPCLSHLREKTIMQLRREASDREELLNRSTTKLRELREER 272



 Score = 20.6 bits (41), Expect(2) = 5.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 450 QGPCLDGPSV 421
           + PC+DGP V
Sbjct: 197 ESPCVDGPCV 206


>SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1540

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 33   LRAPLRAEHVRHLLHPDDLSAHPPRRLPS-LQER 131
            +  P  +   +HL  PD  +AH P R PS L ER
Sbjct: 1157 MEEPQGSTSAQHLAEPDKQAAHEPARTPSALAER 1190


>SB_9673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +1

Query: 70  YYTQTTSAPTRLDDFQVFRRGNASHIYGNYYSNPSYDAYEEPEIENAANVYHTLVSCREY 249
           YYTQ    P+ L+D  + R  NAS +    Y  P         +EN AN     VSC  Y
Sbjct: 93  YYTQRRIRPSTLEDRHIRRSANASQVSCAVYPFP---------LENCANALS--VSCAVY 141


>SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49)
          Length = 351

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 342 SEYDIPFFNYRVTGLDLRNMKREDFVQRMAHPSMDPVASRKIGDNI 479
           SEY++   N+RV  L  R  ++E FV+++    M P  +  +GD +
Sbjct: 74  SEYELQKANHRVENLVKRLNEQEAFVKKLREGEM-PKEATGLGDQV 118


>SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)
          Length = 439

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 387 DLRNMKREDFVQRMAHPSMDPVASRKIGDNIFDRLHTRLNEI 512
           ++RN+ +E  ++ +A  + DP   R++   I + L  R+ E+
Sbjct: 78  NIRNIMKEVLIENLADVNYDPNTCRQLTKTISETLKNRVKEL 119


>SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71)
          Length = 238

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 342 SEYDIPFFNYRVTGLDLRNMKREDFVQRMAHPSMDPVASRKIGDNI 479
           SEY++   N+RV  L  R  ++E FV+++    M P  +  +GD +
Sbjct: 25  SEYELQKANHRVENLVKRLNEQEAFVKKLREGEM-PKEATGLGDQV 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,536,443
Number of Sequences: 59808
Number of extensions: 454631
Number of successful extensions: 1238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)