Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20790
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    35   0.047
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    32   0.44 
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    32   0.44 
Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    29   3.1  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23169-5|AAC46698.2|  316|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U13645-10|AAM15546.1|  418|Caenorhabditis elegans Hypothetical p...    27   9.4  
U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
            C33B4.3a protein.
          Length = 1110

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +3

Query: 261  WKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFVQ----RM 428
            +++K V  W+ DD + W+     S+ +SEY   F + R+ G  LR   R  F Q    R+
Sbjct: 1040 FEHKKVDVWSVDDVIGWL----SSLHLSEYTPAFRSQRINGRCLRQCDRSRFTQLGVTRI 1095

Query: 429  AH 434
            AH
Sbjct: 1096 AH 1097


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 285  WTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFV 419
            WT ++  +W+     SIG+SEY   F    + G +L +++R D +
Sbjct: 1172 WTSEEVCAWL----SSIGMSEYGSTFRKNDIQGSELMHLERSDIM 1212


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 285  WTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFV 419
            WT ++  +W+     SIG+SEY   F    + G +L +++R D +
Sbjct: 1223 WTSEEVCAWL----SSIGMSEYGSTFRKNDIQGSELMHLERSDIM 1263


>Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical
           protein R05D11.6 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 401 HVP*IQASHSVVKERYIVFTDTYALGCVDYPRNCII 294
           HV  I     +  +RY+ F  T++  CVD PR+C I
Sbjct: 160 HVNKINQKIEITIDRYVAFRHTFSQYCVD-PRDCAI 194


>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 282 DWTEDDTVSWIVDTAQSIGISEYDIPFFNY-RVTGLDLRNMKREDFVQR 425
           +W  DD V+W++D A+   I   ++    +  ++G ++  M    F++R
Sbjct: 138 EWLVDDVVAWMLDVAKRHNIPFEEMNMHKFAMLSGQEMLTMSERCFIER 186


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 282 DWTEDDTVSWIVDTAQSIGISEYDIPFFNY-RVTGLDLRNMKREDFVQR 425
           +W  DD V+W++D A+   I   ++    +  ++G ++  M    F++R
Sbjct: 138 EWLVDDVVAWMLDVAKRHNIPFEEMNMHKFAMLSGQEMLTMSERCFIER 186


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 551 EPYHHEQQT-MLDLDAQTTKTDCTPQIINQTTRH 649
           +PY  ++ T  L L  Q  K D TPQ  + +TRH
Sbjct: 459 DPYSSDESTEALSLSCQKPKEDPTPQQASHSTRH 492


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = +1

Query: 19  NKMIDYARPFEQSTCDIYYTQTTSAPTRLDDFQVFRRGNASHIYG--NYYSNPSYDAYEE 192
           N +I YA  FE       Y     A       QV   G   H+ G     ++P YD    
Sbjct: 348 NILIFYANKFETLIRKDSYFTIMLADLVKTVRQVCIAGINHHVDGLMRKMTSPHYDLLPV 407

Query: 193 PEIENAANVYHTLVS 237
           PE+    ++YH L+S
Sbjct: 408 PEVRQCLSLYHGLIS 422


>U23169-5|AAC46698.2|  316|Caenorhabditis elegans Hypothetical
           protein C29H12.6 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 202 ENAANVYHTLVSCREYHRM 258
           +N AN+YH L+S   YH +
Sbjct: 182 DNTANIYHELMSASSYHSL 200


>U13645-10|AAM15546.1|  418|Caenorhabditis elegans Hypothetical
           protein C05D10.4c protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +3

Query: 231 RQLQRVPPDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKRE 410
           R  +++    WK K V +W+ DD + W+    QS  + +       Y + G DL     +
Sbjct: 205 RAKEKMSQAAWKRKTVKEWSLDDVLLWL----QSAQMDDVAGLLIGYDLRGEDLLQWNDQ 260

Query: 411 DFVQ 422
              Q
Sbjct: 261 TLAQ 264


>U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical
           protein C05D10.4b protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +3

Query: 231 RQLQRVPPDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKRE 410
           R  +++    WK K V +W+ DD + W+    QS  + +       Y + G DL     +
Sbjct: 384 RAKEKMSQAAWKRKTVKEWSLDDVLLWL----QSAQMDDVAGLLIGYDLRGEDLLQWNDQ 439

Query: 411 DFVQ 422
              Q
Sbjct: 440 TLAQ 443


>U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical
           protein C05D10.4a protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +3

Query: 231 RQLQRVPPDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKRE 410
           R  +++    WK K V +W+ DD + W+    QS  + +       Y + G DL     +
Sbjct: 352 RAKEKMSQAAWKRKTVKEWSLDDVLLWL----QSAQMDDVAGLLIGYDLRGEDLLQWNDQ 407

Query: 411 DFVQ 422
              Q
Sbjct: 408 TLAQ 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,370
Number of Sequences: 27780
Number of extensions: 336471
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)