Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20790
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 246 VPPDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRVT 380
           VPPD ++   +VD  +    S++          EY I  F    T
Sbjct: 119 VPPDTFQSIALVDVVKSANWSYVSTVYSEGSYGEYGIEVFTREAT 163


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 246 VPPDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRVT 380
           VPPD ++   +VD  +    S++          EY I  F    T
Sbjct: 209 VPPDTFQSIALVDVVKSANWSYVSTVYSEGSYGEYGIEVFTREAT 253


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 157 YYSNPSYDAYE 189
           YY  PSYDA E
Sbjct: 409 YYLKPSYDAQE 419


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 51  AEHVRHLLHPDDLSAHPPRRLPSLQERKRF 140
           AE+ R+     +     P R+P LQE   F
Sbjct: 257 AEYRRNFKKMQEEKIFEPHRIPQLQEVSEF 286


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +1

Query: 88  SAPTRLDDFQVFRRGNASHIYGNYYSNPSYDAYEEPEIE 204
           S+P    D  +++  +  H +   Y    Y  YE P+ E
Sbjct: 59  SSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYENPDEE 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,827
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)