Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20790
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28490.1 68415.m03462 cupin family protein similar to preproM...    29   2.9  
At5g24740.1 68418.m02920 expressed protein                             27   8.8  
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    27   8.8  
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD...    27   8.8  

>At2g28490.1 68415.m03462 cupin family protein similar to
           preproMP27-MP32 [Cucurbita cv. Kurokawa Amakuri]
           GI:691752, allergen Gly m Bd 28K [Glycine max]
           GI:12697782, vicilin [Matteuccia struthiopteris]
           GI:1019792; contains Pfam profile PF00190: Cupin
          Length = 511

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 438 LDGPSVGRSLHASCSVDPSQSL 373
           L    +G+ LH  CS+DP+QSL
Sbjct: 179 LHNTGLGQRLHVICSIDPTQSL 200


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 133  NASHIYGNYYSNPSYDAYEEPEIENAANVYHTLVSCREYHRMIGSTKWWSIG 288
            +ASH   +++   ++DA E P  +N+       V  R+   +I   KW   G
Sbjct: 1570 HASHQVLSFWHGITFDAPETPSSQNSEGNMSIKVQIRDVSLLISDGKWGCSG 1621


>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 383 ASHSVVKERYIVFTDTYALGCVDYPRNCIIFGP--IDHHFVLPIIRWYSLQLT 231
           AS +V+   + +    YALGC  +PR  I+  P  +     +P I W  + LT
Sbjct: 342 ASQAVIFATFSIVKQCYALGC--FPRVKIVHKPRWVLGQIYIPEINWVVMILT 392


>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 334

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 163 SNPSYDAYEEPEIENAANVYHTLVSCREYHRMIGSTKWWSIGPKMIQFR 309
           +N +YDA     +   ANV HT+   R  H+M  +     + P +++ R
Sbjct: 195 NNRNYDATRAYALSKLANVLHTVELSRLLHKMDANVTANCVHPGIVKTR 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,453
Number of Sequences: 28952
Number of extensions: 317432
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)