Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20789
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.7  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    27   3.7  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    26   6.5  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   6.5  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    25   8.6  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 356  LHVLNIWGFFWYVLGSIGIVRAHKISLKTSFIYVDTFVDSFRLLPVLVSTFS 201
            LH L  +G   Y+LGSI +V   ++SL +   ++  +  +      L S+FS
Sbjct: 850  LHYLKYFGSNKYILGSILLVMMSQVSLASIHFWIALWSGNSLFSLKLPSSFS 901


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 62  LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISS 172
           LEE N + +   +  EDD+++   S+TS V  +  S+
Sbjct: 340 LEEKNASTKTENDSNEDDKEECQSSSTSSVPESTAST 376


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +3

Query: 231 SKRIHEGVYVNERRLQRDFMRSNYTNRPKNIP---KETPDVKNMEKALLELLDDFHTGKL 401
           ++ + E +   E  +   + R   TNR   IP   KE  +  N EK  ++      T + 
Sbjct: 272 NRHMLELINTTETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTNET 331

Query: 402 SAFGSGCSMEQMINIRDQ-QEHLARLHFRLCA 494
            +F      E+MI  RD     L+  H R+ A
Sbjct: 332 ESFFQ-AKEEKMIETRDALNSELSEYHERIRA 362


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 53  SLHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEPQV 184
           S  L++AN       ++   ++   P+  TSP++++   S P +
Sbjct: 98  SSDLQQANSPVASYSSQSVSNDSNFPKDVTSPISTDLSGSNPSL 141


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 288 MRSNYTNRPKNIPKETPDVKNMEKALL 368
           M  NY N+P N PK+    K M   LL
Sbjct: 124 MYDNYVNKPSNDPKQKNKQKLMISELL 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,244
Number of Sequences: 5004
Number of extensions: 64095
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)