Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20789
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 31 1.3
01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756 29 2.9
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 29 3.9
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 5.1
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 29 5.1
07_03_1071 + 23753883-23754752 28 6.8
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 28 6.8
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 28 9.0
05_07_0350 - 29457444-29457871,29458786-29461456 28 9.0
04_04_0967 + 29782460-29783725 28 9.0
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 326 WYVLGSIGIVRAHKISLKTSFIYVDTFVDSFRLLPVLVSTFS*FFDVK 183
WYV+G +G + + L S + D DS + V+ S+F DV+
Sbjct: 645 WYVMGRLGAYNSSNLQLANSMLDYDPSYDSDQASGVMPSSFHDISDVE 692
>01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756
Length = 785
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKP 509
E DV + ++E+++ S G G + +++ + Q HL + R C D+
Sbjct: 672 EKVDVYSYGVVMIEIINGRPNLDHSNLGGGIQLLKLLQEKAQNSHLEDMIDRKCNDMSLH 731
Query: 510 QKIILKIQHL 539
Q+ ++KI L
Sbjct: 732 QQDVIKIMKL 741
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 405 AFGSGCSMEQMI---NIRDQQEHLARLHFRLCADVDKPQK 515
+F S C ++ + NI D E L +H C D DKP K
Sbjct: 435 SFNSSCEVQCPLCGSNISDLSEELRLVHTNSCLDGDKPAK 474
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 432 VPCYNLIQKHLTFLCENHLIAQVVLSPCS*HLGFLLVCSWVYWY 301
VPC K + +LC + Q V++ C + F V S W+
Sbjct: 598 VPCVVPNNKFMQYLCRKGMTTQNVMAACDFDMRFTFVLSGWAWF 641
>03_06_0448 -
34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 56 LHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISS 172
+++ E E M+N+ ED+ KIPQ + ++ + ++S
Sbjct: 876 VNMVECGEDINPMKNDNEDEHDKIPQPLENAISDSNMTS 914
>07_03_1071 + 23753883-23754752
Length = 289
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 68 EANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEPQV*HQKIMKKYSPVLVTV*TNPR 247
E E QQ + + +Q SATS +S +SEP + ++K P P
Sbjct: 108 EEEEQQQRKGGKNKRKQQAAATSATSSQSSTPPTSEPASPREDVIKPARPAAAAAAAEPG 167
Query: 248 RCLRK 262
RK
Sbjct: 168 SAKRK 172
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +3
Query: 348 NMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPQKIILK 527
++ K E + F L S + +I+ D L R+ C ++ +
Sbjct: 1116 DIPKLTAECVSKFRVQDLLHVSSSAVLNNIISAEDLPSSLQRISIVDCPNISSLPDLPSS 1175
Query: 528 IQHLEIKWNSLLKAWNSCRI 587
+QH+ I+ LLK SCR+
Sbjct: 1176 LQHIYIRDCPLLK--ESCRV 1193
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/28 (42%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = -3
Query: 688 TKLNYTT*NKINFKLWFFF-STATWICV 608
+KLNYT N+ N++ +F F +T+T++C+
Sbjct: 202 SKLNYTRLNR-NYRYFFLFVATSTFLCI 228
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 524 ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPCSST 631
E+S R M ++V+ LEQ + R H P +ST
Sbjct: 989 EHSVERPTMREVVQMLEQAKQQLSRCHPPPPPPTST 1024
>04_04_0967 + 29782460-29783725
Length = 421
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 339 DVKNMEKALLELLDDFHTGKLSA 407
DV +M KALLELL D + KLS+
Sbjct: 236 DVDDMVKALLELLSDGASAKLSS 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,531,398
Number of Sequences: 37544
Number of extensions: 350458
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -