Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20789
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40528| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      32   0.56 
SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)                 28   9.1  

>SB_40528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/50 (52%), Positives = 37/50 (74%)
 Frame = +3

Query: 339 DVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL 488
           DVK ME+ LLEL+DDF+ G+L AFG   ++E+M  +R+ QE +A+ HF L
Sbjct: 50  DVKQMERGLLELMDDFNHGRLHAFGRDFTLEKMDKVRELQERVAQQHFEL 99


>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 243 HEGVYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGK 398
           H+ +Y  +  L+R+F+ + YT  P +   + P   N  +  LE  D+   G+
Sbjct: 681 HQTMYYKDEELKREFLSARYTRLPSDDRSQRPTPANSVEGSLEDRDEQSDGE 732


>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 511 CGLSTSAHKRKCNLAKCSC*SLMLIICSMLQPDPK 407
           C L++ + KR C+ A      LM +IC +L PDP+
Sbjct: 799 CTLASPSRKRFCSDAVSE---LMFVICWILHPDPR 830


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 551 EQLVKSLEQLSNSIERLHCDTNPCSSTEEKP 643
           ++ VK  ++L + I++++   + CSSTEE P
Sbjct: 288 KESVKERQRLQSEIDKINEKLSNCSSTEESP 318


>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
          Length = 1641

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/78 (28%), Positives = 38/78 (48%)
 Frame = +2

Query: 107  EDDEQKIPQSATSPVTSNKISSEPQV*HQKIMKKYSPVLVTV*TNPRRCLRK*KTSSKRF 286
            E+D +K+P+SA    +  KI +       +++ K++ +  T  T         K  S RF
Sbjct: 814  EEDYRKLPKSAKLKQSGVKIFAYQSTNPLQVLGKFTAI--TESTT--------KNISARF 863

Query: 287  YALELYQ*TQEHTKRNPR 340
            Y L L+Q  Q+ T + P+
Sbjct: 864  YVLNLFQTVQQVTAKTPQ 881


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,153,020
Number of Sequences: 59808
Number of extensions: 430932
Number of successful extensions: 1098
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)