Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20789
         (741 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC108717-1|AAI08718.1|  274|Homo sapiens coiled-coil domain cont...    69   2e-11
BC080566-1|AAH80566.1|  237|Homo sapiens CCDC28A protein protein.      69   2e-11
BC013019-1|AAH13019.1|  130|Homo sapiens CCDC28A protein protein.      69   2e-11
BC004464-1|AAH04464.1|  162|Homo sapiens CCDC28A protein protein.      69   2e-11
AY167571-1|AAN87344.1|  274|Homo sapiens chemokine C-C motif rec...    69   2e-11
AL121834-1|CAI42866.1|  274|Homo sapiens coiled-coil domain cont...    69   2e-11
BC022848-1|AAH22848.1|  200|Homo sapiens coiled-coil domain cont...    69   2e-11
BC002462-1|AAH02462.1|  241|Homo sapiens CCDC28B protein protein.      69   2e-11
AL049795-5|CAB75616.1|  200|Homo sapiens coiled-coil domain cont...    69   2e-11
AL049795-4|CAI22057.1|  241|Homo sapiens coiled-coil domain cont...    69   2e-11
L19872-1|AAA16210.1|  848|Homo sapiens AH-receptor protein.            32   2.5  
D16354-1|BAA03857.1|  808|Homo sapiens Ah receptor protein.            32   2.5  
BC070080-1|AAH70080.1|  848|Homo sapiens AHR protein protein.          32   2.5  
BC069390-1|AAH69390.1|  848|Homo sapiens aryl hydrocarbon recept...    32   2.5  
L04510-1|AAA35940.1|  574|Homo sapiens nucleotide binding protei...    31   4.3  
BC022510-1|AAH22510.1|  574|Homo sapiens tripartite motif-contai...    31   4.3  
AF230399-1|AAG50178.1|  546|Homo sapiens tripartite motif protei...    31   4.3  
AF230398-1|AAG50177.1|  569|Homo sapiens tripartite motif protei...    31   4.3  
AF230397-1|AAG50176.1|  574|Homo sapiens tripartite motif protei...    31   4.3  

>BC108717-1|AAI08718.1|  274|Homo sapiens coiled-coil domain
           containing 28A protein.
          Length = 274

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 44/59 (74%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDK 506
           +  DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R  QE LARL+  L  ++++
Sbjct: 171 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEE 229


>BC080566-1|AAH80566.1|  237|Homo sapiens CCDC28A protein protein.
          Length = 237

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 44/59 (74%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDK 506
           +  DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R  QE LARL+  L  ++++
Sbjct: 134 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEE 192


>BC013019-1|AAH13019.1|  130|Homo sapiens CCDC28A protein protein.
          Length = 130

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 44/59 (74%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDK 506
           +  DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R  QE LARL+  L  ++++
Sbjct: 27  DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEE 85


>BC004464-1|AAH04464.1|  162|Homo sapiens CCDC28A protein protein.
          Length = 162

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 44/59 (74%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDK 506
           +  DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R  QE LARL+  L  ++++
Sbjct: 59  DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEE 117


>AY167571-1|AAN87344.1|  274|Homo sapiens chemokine C-C motif
           receptor-like 1 adjacent protein.
          Length = 274

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 44/59 (74%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDK 506
           +  DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R  QE LARL+  L  ++++
Sbjct: 171 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEE 229


>AL121834-1|CAI42866.1|  274|Homo sapiens coiled-coil domain
           containing 28A protein.
          Length = 274

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 30/59 (50%), Positives = 44/59 (74%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDK 506
           +  DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R  QE LARL+  L  ++++
Sbjct: 171 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEE 229


>BC022848-1|AAH22848.1|  200|Homo sapiens coiled-coil domain
           containing 28B protein.
          Length = 200

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL 488
           E  DV  ME  LL LL+DFH+G+L AFG  CS EQ+ ++R+ QE LARLHF L
Sbjct: 84  EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSL 136



 Score = 31.1 bits (67), Expect = 4.3
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 512 EDNFENSASRDKMEQLVKSLEQLSNSIERLHCDTN 616
           E+  +  A R+ ++QL+ +LE LSNSI++LH   N
Sbjct: 158 EEQKKTMADRN-LDQLLSNLEDLSNSIQKLHLAEN 191


>BC002462-1|AAH02462.1|  241|Homo sapiens CCDC28B protein protein.
          Length = 241

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL 488
           E  DV  ME  LL LL+DFH+G+L AFG  CS EQ+ ++R+ QE LARLHF L
Sbjct: 84  EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSL 136


>AL049795-5|CAB75616.1|  200|Homo sapiens coiled-coil domain
           containing 28B protein.
          Length = 200

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL 488
           E  DV  ME  LL LL+DFH+G+L AFG  CS EQ+ ++R+ QE LARLHF L
Sbjct: 84  EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSL 136



 Score = 31.1 bits (67), Expect = 4.3
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 512 EDNFENSASRDKMEQLVKSLEQLSNSIERLHCDTN 616
           E+  +  A R+ ++QL+ +LE LSNSI++LH   N
Sbjct: 158 EEQKKTMADRN-LDQLLSNLEDLSNSIQKLHLAEN 191


>AL049795-4|CAI22057.1|  241|Homo sapiens coiled-coil domain
           containing 28B protein.
          Length = 241

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = +3

Query: 330 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL 488
           E  DV  ME  LL LL+DFH+G+L AFG  CS EQ+ ++R+ QE LARLHF L
Sbjct: 84  EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSL 136


>L19872-1|AAA16210.1|  848|Homo sapiens AH-receptor protein.
          Length = 848

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +3

Query: 381 DFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPQKIILKIQHLEIKWNSL 560
           D+   +  A  S C +++ +++  QQ+H    H +    V+  Q++  K++H+++  N +
Sbjct: 598 DYQQQQSLALNSSCMVQEHLHLEQQQQH----HQKQVV-VEPQQQLCQKMKHMQV--NGM 650

Query: 561 LKAWNS 578
            + WNS
Sbjct: 651 FENWNS 656


>D16354-1|BAA03857.1|  808|Homo sapiens Ah receptor protein.
          Length = 808

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +3

Query: 381 DFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPQKIILKIQHLEIKWNSL 560
           D+   +  A  S C +++ +++  QQ+H    H +    V+  Q++  K++H+++  N +
Sbjct: 598 DYQQQQSLALNSSCMVQEHLHLEQQQQH----HQKQVV-VEPQQQLCQKMKHMQV--NGM 650

Query: 561 LKAWNS 578
            + WNS
Sbjct: 651 FENWNS 656


>BC070080-1|AAH70080.1|  848|Homo sapiens AHR protein protein.
          Length = 848

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +3

Query: 381 DFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPQKIILKIQHLEIKWNSL 560
           D+   +  A  S C +++ +++  QQ+H    H +    V+  Q++  K++H+++  N +
Sbjct: 598 DYQQQQSLALNSSCMVQEHLHLEQQQQH----HQKQVV-VEPQQQLCQKMKHMQV--NGM 650

Query: 561 LKAWNS 578
            + WNS
Sbjct: 651 FENWNS 656


>BC069390-1|AAH69390.1|  848|Homo sapiens aryl hydrocarbon receptor
           protein.
          Length = 848

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +3

Query: 381 DFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPQKIILKIQHLEIKWNSL 560
           D+   +  A  S C +++ +++  QQ+H    H +    V+  Q++  K++H+++  N +
Sbjct: 598 DYQQQQSLALNSSCMVQEHLHLEQQQQH----HQKQVV-VEPQQQLCQKMKHMQV--NGM 650

Query: 561 LKAWNS 578
            + WNS
Sbjct: 651 FENWNS 656


>L04510-1|AAA35940.1|  574|Homo sapiens nucleotide binding protein
           protein.
          Length = 574

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 360 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 494
           ALLELL+    G +  +G+     G S E +I   + + HLA ++  +CA
Sbjct: 94  ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143


>BC022510-1|AAH22510.1|  574|Homo sapiens tripartite
           motif-containing 23 protein.
          Length = 574

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 360 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 494
           ALLELL+    G +  +G+     G S E +I   + + HLA ++  +CA
Sbjct: 94  ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143


>AF230399-1|AAG50178.1|  546|Homo sapiens tripartite motif protein
           TRIM23 gamma protein.
          Length = 546

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 360 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 494
           ALLELL+    G +  +G+     G S E +I   + + HLA ++  +CA
Sbjct: 94  ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143


>AF230398-1|AAG50177.1|  569|Homo sapiens tripartite motif protein
           TRIM23 beta protein.
          Length = 569

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 360 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 494
           ALLELL+    G +  +G+     G S E +I   + + HLA ++  +CA
Sbjct: 94  ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143


>AF230397-1|AAG50176.1|  574|Homo sapiens tripartite motif protein
           TRIM23 alpha protein.
          Length = 574

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 360 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 494
           ALLELL+    G +  +G+     G S E +I   + + HLA ++  +CA
Sbjct: 94  ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,857,682
Number of Sequences: 237096
Number of extensions: 1966895
Number of successful extensions: 4606
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4601
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)