Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20789
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92777-2|CAB07167.1|  387|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z92777-2|CAB07167.1|  387|Caenorhabditis elegans Hypothetical
           protein C17H1.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 444 IRDQQEHLARLHFRLCADVDKPQKIILKI 530
           +RD ++ +A+LH    A++DK  K +LK+
Sbjct: 139 VRDVEDQMAKLHLERGAELDKHHKKMLKM 167


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -2

Query: 347 LNIWGFFWYVLGSIGIVRAHKIS-LKTSFIYVDTFVDSFRLLPVLVSTFS*FFDVKLAVR 171
           L I+G F+     +  V+  K   LKT F +   F  SF L+ ++V T +  ++ +  +R
Sbjct: 107 LTIYGTFFLKYRMVKGVQMSKFEILKTYFTFYCPFCLSFILVIIIVKTQTFSWEAQEQLR 166

Query: 170 LISYYS*QAKSHFVVSFV 117
           L++ +      + V +F+
Sbjct: 167 LVNLFLNNEDEYLVFAFL 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,718
Number of Sequences: 27780
Number of extensions: 348177
Number of successful extensions: 1111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)