Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20789
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containi...    29   3.2  
At5g16280.1 68418.m01901 expressed protein                             29   4.3  
At5g08400.1 68418.m00989 expressed protein predicted proteins, A...    29   4.3  
At3g08800.1 68416.m01022 expressed protein                             29   4.3  
At1g03430.1 68414.m00323 two-component phosphorelay mediator, pu...    28   5.7  
At3g50850.1 68416.m05568 expressed protein                             28   7.5  
At1g80100.1 68414.m09376 phosphotransfer family protein similar ...    28   7.5  
At4g31570.1 68417.m04483 expressed protein                             27   9.9  
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport...    27   9.9  

>At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 860

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 645 YGFSSVLLHGFVSQCSLSIEFDNCSKLLTSCSILSL 538
           YG+S++ L GF+ Q S+  +    S +++ CS+L L
Sbjct: 353 YGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGL 388


>At5g16280.1 68418.m01901 expressed protein
          Length = 1265

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 339 DVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCAD 497
           D + ME A    +    +G  +A   G    +M+  RDQ +  A ++FR+C +
Sbjct: 384 DSECMENAFSTYMKLGKSGFQNATRCGLWWAEMLKARDQHKEAASVYFRICGE 436


>At5g08400.1 68418.m00989 expressed protein predicted proteins,
           Arabidopsis thaliana and Synechocystis sp.
          Length = 333

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 326 WYVLGSIGIVRAHKISLKTSFIYVDTFVDSFRLLPVLVSTFS*FFDVK 183
           WYV+G +G      + L  + +  D   D+ +   V+ S+F    DV+
Sbjct: 220 WYVMGRLGAFNTSNLQLANTSLEYDPLYDAEKGFKVMPSSFHDISDVE 267


>At3g08800.1 68416.m01022 expressed protein
          Length = 936

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 651 LSYGFSSVLLHGFVSQCSLSIEFDNCSKLLTSCSILSLDA--EFSKLSSVVYLHQHTNGN 478
           L++ +S  +L  F S     ++ D     LT C+ILS  +  EF+K    V+ H + + N
Sbjct: 508 LAFSYSLAMLGKFSSGLHDMMDQDMLLAYLTHCAILSSSSGTEFNK--GDVFFHAYRDSN 565

Query: 477 ATWLSAPV 454
           A     PV
Sbjct: 566 ADLAGNPV 573


>At1g03430.1 68414.m00323 two-component phosphorelay mediator,
           putative strong similarity to ATHP1 [Arabidopsis
           thaliana] GI:4156241
          Length = 157

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -1

Query: 615 FVSQCSLSIEFDNCSKLLTSCSILSLD----AEFSKLSSVVYLHQHTNGNATWLSAPVDL 448
           FV++  +S+ FD+CSKL+ + SI SL+     +F ++ S V  HQ    +++  +  V  
Sbjct: 44  FVAEV-VSLFFDDCSKLINTMSI-SLERPDNVDFKQVDSGV--HQLKGSSSSVGARRVKN 99

Query: 447 LC*SFVPCYNLIQKHLTFLC 388
           +C SF  C ++  +     C
Sbjct: 100 VCISFKECCDVQNREGCLRC 119


>At3g50850.1 68416.m05568 expressed protein
          Length = 251

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 119 VRHLHLHSALIVAFRLLLLDVNSSRYF 39
           V H+HL+  L+   R LLL+ +S R F
Sbjct: 173 VYHVHLYEPLLKTLRFLLLEGSSERVF 199


>At1g80100.1 68414.m09376 phosphotransfer family protein similar to
           histidine-containing phosphotransfer protein
           [Catharanthus roseus] GI:13774348, ATHP3 [Arabidopsis
           thaliana] GI:4156245
          Length = 157

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 597 LSIEFDNCSKLLTSCSILSLDAEFSKLSSV-VYLHQHTNGNATWLSAPVDLLC*SF 433
           ++I FD   KLL +  +L +D EFS    + ++L+Q    +++  +  V  +C +F
Sbjct: 49  INIYFDESEKLLRNLRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAF 104


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 294 SNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMI 440
           S ++   KN+ K    V+N+E+A+ ++L D    K S  G+  ++ ++I
Sbjct: 836 SEFSALMKNLEKGEKMVQNLEEAIKQILTDSSVSKSSDKGATPAVSKLI 884


>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 342 HLGFLLVCSWVYWY 301
           +LG+ LVCSW+Y Y
Sbjct: 529 NLGYFLVCSWLYRY 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,966,814
Number of Sequences: 28952
Number of extensions: 309893
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)