Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20788
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                97   9e-21
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            27   0.32 
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               30   2.1  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   29   2.8  
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.8  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   6.4  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   6.4  
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)           28   8.4  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           25   9.3  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 42/60 (70%), Positives = 51/60 (85%)
 Frame = +1

Query: 43  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSRTGKHGHAKV 222
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTS+TGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +3

Query: 321 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 500
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 501 VK 506
           VK
Sbjct: 703 VK 704


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 27.5 bits (58), Expect(2) = 0.32
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 107 SPCNVRPCVKTVSLC*RVVHARLLKCPHPEPESTATLKFTWLGLISSMVKV*RY 268
           +PC ++ C + +S+    V   ++K P  +P    TL   ++G  +  +K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451



 Score = 23.8 bits (49), Expect(2) = 0.32
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 89  PGPQPPSPCNVRP 127
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 56  TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 190
           T+K HT +P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 8   HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 130
           H   L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 92  HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 44  QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPEP 199
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 523 VESCVALTAMTHSS----PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIR 356
           V  C  L A++  S    P+  S V + +LP+   V  C+P SPS I RS    P     
Sbjct: 235 VVECGGLRAISECSDPYPPRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISN 293

Query: 355 VR 350
           VR
Sbjct: 294 VR 295


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 133 KNGFVMLKGRPCKIV-EMSTSRTGKHGHAKVHLVGIDIFNGKSMKISVPPH 282
           + G +M +G+PCKI   +   + G HG   +H+ G D  NG    +S  PH
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG---CVSAGPH 62


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 145  RNRFYAGPNIAW--GRWLRPRSLRSQSV 68
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 23  TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 127
           +VV     + VT K  T +P TP P  P P   RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 288 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 455
           +D+P+ K + + L  ++DD  L+    +  D   L E L  PD  +    R   D G E 
Sbjct: 37  LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94

Query: 456 LCTVLKSCGEEC 491
           LC  L+     C
Sbjct: 95  LCMTLRRFAYPC 106


>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 872

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +3

Query: 264 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLGTQLRT 431
           D+  S H +D+P+   E++    + +D  ++      +D   L E L+IPD    T  + 
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDRL--TLYQR 648

Query: 432 DFDSGKELLCTVLKSCGEECVIAVKATQLSTNKP 533
              SG E LC VLK     C  A    + S   P
Sbjct: 649 SVCSGLEALCIVLKRLAYPCRYADMVAKFSRPVP 682


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 25.0 bits (52), Expect(2) = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 62  KTHTLRPETPGPQPPSP 112
           K H  +P  P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360



 Score = 21.0 bits (42), Expect(2) = 9.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 86  TPGPQPPSPCNVRPCVKT 139
           T GP PP+  N +P   T
Sbjct: 377 TFGPPPPAASNAKPAQYT 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,973,180
Number of Sequences: 59808
Number of extensions: 511036
Number of successful extensions: 1500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)