Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20788
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   108   4e-24
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.80 
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   2.4  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   2.4  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   2.4  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   2.4  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   4.3  
AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   9.8  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  120 bits (288), Expect = 1e-27
 Identities = 53/72 (73%), Positives = 60/72 (83%)
 Frame = +1

Query: 61  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSRTGKHGHAKVHLVGID 240
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTS+TGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 241 IFNGKSMKISVP 276
           IF  K ++   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
 Frame = +3

Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRT 431
           K EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG Q+R 
Sbjct: 72  KLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRD 130

Query: 432 DFDSGK-ELLCTVLKSCGEECVIAVKAT 512
            ++  +  +L  V+ + GEE ++  K +
Sbjct: 131 AYEKDEGSVLVQVVSAIGEEAILGWKVS 158


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  108 bits (259), Expect = 4e-24
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +1

Query: 61  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSRTGKHGHAKVHLVGID 240
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTS+TGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 241 IFNGKSMKISVP 276
           IF  K ++   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
 Frame = +3

Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRT 431
           K EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG  +R 
Sbjct: 106 KLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIRE 164

Query: 432 DFDSGK-ELLCTVLKSCGEECVIAVK 506
             +  +  +L  V+ +CGEE ++  K
Sbjct: 165 ALEKDEGSVLVQVVAACGEEAILGYK 190


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 285 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 455
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 456 LCTVLKSCGEEC 491
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 56  TSKTHTLRPETPGPQPPSPCNVRP 127
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK973.8 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 526 FVESC-VALTAMTHSSPQDFSTVHNNSL 446
           FV SC V +T + H  P  F+TVH  SL
Sbjct: 16  FVHSCQVPITEVNHMMPIHFATVHEYSL 43


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 345 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 461
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 143 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 51
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 261 EDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 395
           ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 81  EDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 508 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 389
           ALT+MT   PQ       NSL  SK +   + ++P G+LR
Sbjct: 33  ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +1

Query: 367  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 507
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +1

Query: 367  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 507
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 310 RFTWGTSMLCVEGQISSYFY 251
           +F W TS LCV      YFY
Sbjct: 279 KFLWATSRLCVNENTVKYFY 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,705,039
Number of Sequences: 27780
Number of extensions: 368619
Number of successful extensions: 1133
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)