Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20787
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 118 7e-28
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 118 1e-27
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 39 9e-04
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 29 0.52
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 29 0.69
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 27 2.8
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 26 4.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.9
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 4.9
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 118 bits (285), Expect = 7e-28
Identities = 50/92 (54%), Positives = 62/92 (67%)
Frame = +3
Query: 258 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 437
VCHTDAYTLSG DPEG FP+VL +V+PGDHV+ LY P+C CKFC
Sbjct: 46 VCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFC 105
Query: 438 LNPKTNLCQKVRSTQGQGVMPDGTGDSAVKDR 533
+ KTNLC K+R TQG+G+MPDGT + +D+
Sbjct: 106 RSGKTNLCSKIRETQGRGLMPDGTSRFSCRDK 137
Score = 100 bits (239), Expect = 2e-22
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +2
Query: 512 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 691
RF C+ + L H+MGCS+FSQYTVV +ISL ++ +APL +CLLGCGV TG+GA ++AK
Sbjct: 131 RFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAK 190
Query: 692 VEPGSNCAIFGLGAV 736
VE GS A+ G G V
Sbjct: 191 VESGSTVAVVGCGCV 205
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +1
Query: 124 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKI 246
MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+
Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKV 41
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 118 bits (283), Expect = 1e-27
Identities = 50/85 (58%), Positives = 62/85 (72%)
Frame = +3
Query: 255 GVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKF 434
GVCHTDAYTLSGKDPEG+FPV+L T+V+ GD V+ LY P+C TCKF
Sbjct: 48 GVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKF 107
Query: 435 CLNPKTNLCQKVRSTQGQGVMPDGT 509
C + KTNLC ++R+TQG+G+MPDGT
Sbjct: 108 CKSGKTNLCGRIRTTQGKGLMPDGT 132
Score = 106 bits (255), Expect = 3e-24
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +2
Query: 512 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 691
RF C G L HFMGCSTFS+YTVV +IS+ + APLD VCLLGCG+ TGYGAA TA
Sbjct: 134 RFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITAD 193
Query: 692 VEPGSNCAIFGLGAV 736
++ G + A+FGLG+V
Sbjct: 194 IKEGDSVAVFGLGSV 208
Score = 55.2 bits (127), Expect = 9e-09
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 130 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKI 246
T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI
Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKI 44
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 38.7 bits (86), Expect = 9e-04
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 GVCHTDAYTLSGKDP-EGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHV-VPLYVPQCNTC 428
GVCHTD + L G P P++ T +K GD V V C C
Sbjct: 44 GVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNC 103
Query: 429 KFCLNPKTNLCQKVRSTQGQGVMPDGT 509
++C+ + +C + Q G DGT
Sbjct: 104 EYCMKAEETICPHI---QLSGYTVDGT 127
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 29.5 bits (63), Expect = 0.52
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +3
Query: 255 GVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNT 425
G+C +D Y G + + P++L +S+KPGD V C
Sbjct: 40 GICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRL 99
Query: 426 CKFCLNPKTNLC 461
C +C + + NLC
Sbjct: 100 CDYCRSGRYNLC 111
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 551 GCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK--VEPGSNCAIFG 724
GC F +Y V+ +L + +++ L C T + + + V+PG+N + G
Sbjct: 116 GC--FQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGNNVLVLG 173
Query: 725 LGAV 736
G V
Sbjct: 174 TGGV 177
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 20 ICLIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 133
+ L+ F +V S S + F+ L FQH S P +SC Q
Sbjct: 175 LALLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +3
Query: 396 VPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTG-DSAVKDRNSTISWV 554
+P +VP C + L K R G++ G G D KD SW+
Sbjct: 877 IPYFVPSCRQALWNLRLAIEEEGKRRFVTNGGILAQGAGSDGVAKDVPENHSWL 930
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 596 LCKVAEAAPLDKVCLLGCGVPTGY 667
+CKV E A L CLL C T +
Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTF 1002
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 722 QK*RNLILVQLWQYSRRLHNL*VHRIPANKLYLMEQPLQLYREKFLEQLC 573
Q R+L V + R H L +H++ K + +Q ++ R+ L+ LC
Sbjct: 207 QNCRDLDAVACHERIARYHILCIHQLCEKKQFSAQQEVEQLRKGILQSLC 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,653
Number of Sequences: 5004
Number of extensions: 61997
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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