Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20787
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            32   0.56 
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   29   3.0  
SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 28/37 (75%), Positives = 29/37 (78%)
 Frame = +1

Query: 145 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 255
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI AT
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILAT 38



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 23/43 (53%), Positives = 25/43 (58%)
 Frame = +3

Query: 255 GVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKP 383
           GVCHTDAYTLSG DPEG+FP +L               T VKP
Sbjct: 39  GVCHTDAYTLSGVDPEGLFPCILGHEGGGIVESVGEGVTKVKP 81


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 25/84 (29%), Positives = 33/84 (39%)
 Frame = +3

Query: 255 GVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKF 434
           G+C  D   L G+ P     VVL                +V  GD VV      CNTCK 
Sbjct: 84  GICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIGDRVVVNPNSSCNTCKA 142

Query: 435 CLNPKTNLCQKVRSTQGQGVMPDG 506
           C   + + C+K  +    GV  +G
Sbjct: 143 CRRGQPHFCEKGGTGSAIGVWKNG 166


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = +3

Query: 246 HGHGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQ 416
           H  G+C +D  Y   G   + V   P+VL               + +K GD V       
Sbjct: 27  HTVGICGSDVHYWKHGCIGDFVLTAPMVLGHESSGVICAVGEGVSDLKEGDRVAIEPGTP 86

Query: 417 CNTCKFCLNPKTNLCQKV 470
           C TC +C   + NLC K+
Sbjct: 87  CRTCSYCKKGRYNLCAKM 104


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 375 VKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 506
           V  GD VV   +  C  C FCL  + +LC+        G+  +G
Sbjct: 75  VSVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 257 SVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 108
           SV+V     S + G  +S SS    +P+S  +      T+PT DM A  N
Sbjct: 2   SVSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 272 VSMADSVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALD 111
           VSMA+      T+T P F    S    +  +P+ H    K L    T ++T  D
Sbjct: 436 VSMAERCYTFQTKTPPRFRSRRSQEQSEDDVPSQHGKQKKGLTCPKTPNLTTSD 489


>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 327 VPVLQETLPQDLFRRVYTRQYGRLRGRDLNAHFTGFW-----RVHFNLLDGQRL 181
           VP L++ +P +L       +Y   RG  ++AHF  FW      V  NLL   RL
Sbjct: 150 VPGLKDFVPVELCNL----EYDEARGSSIDAHFDDFWLWGERLVTLNLLSATRL 199


>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -1

Query: 714 AQFDPGSTLAVFKAAP*PVGTPHPSKQT--LSNGAASATLQREISRT 580
           ++ +PGST ++  ++  P  +P+P+K +  L  G +S+T+ + +S T
Sbjct: 446 SEVEPGSTSSITGSSKYPPVSPNPAKPSNILFEGPSSSTVFKSLSPT 492


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,723,138
Number of Sequences: 59808
Number of extensions: 512169
Number of successful extensions: 1134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)