Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20787
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 122 3e-28
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 121 5e-28
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 121 5e-28
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 121 5e-28
Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical pr... 30 1.5
AC024755-1|AAF59637.2| 369|Caenorhabditis elegans Hypothetical ... 30 1.5
AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical ... 30 2.0
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical... 29 3.4
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 122 bits (294), Expect = 3e-28
Identities = 52/84 (61%), Positives = 58/84 (69%)
Frame = +3
Query: 258 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 437
VCHTDAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C
Sbjct: 220 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGKGVTGFAPGDHVVPLYVPQCKECEYC 279
Query: 438 LNPKTNLCQKVRSTQGQGVMPDGT 509
NPKTN+CQK+R +QG G MPDGT
Sbjct: 280 KNPKTNMCQKIRVSQGDGFMPDGT 303
Score = 120 bits (290), Expect = 8e-28
Identities = 53/75 (70%), Positives = 62/75 (82%)
Frame = +2
Query: 512 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 691
RF C G++L+HFMGCSTFS+YTVV +ISLCKV APL+KV LLGCG+ TGYGA LNT K
Sbjct: 305 RFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPQAPLEKVSLLGCGISTGYGAVLNTCK 364
Query: 692 VEPGSNCAIFGLGAV 736
VE GS A++GLGAV
Sbjct: 365 VEEGSTVAVWGLGAV 379
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 121 bits (292), Expect = 5e-28
Identities = 52/84 (61%), Positives = 58/84 (69%)
Frame = +3
Query: 258 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 437
VCHTDAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C
Sbjct: 47 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYC 106
Query: 438 LNPKTNLCQKVRSTQGQGVMPDGT 509
NPKTNLCQK+R +QG G MPDG+
Sbjct: 107 KNPKTNLCQKIRISQGNGFMPDGS 130
Score = 120 bits (290), Expect = 8e-28
Identities = 53/75 (70%), Positives = 62/75 (82%)
Frame = +2
Query: 512 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 691
RF C G++L+HFMGCSTFS+YTVV +ISLCKV APL+KV LLGCG+ TGYGA LNT K
Sbjct: 132 RFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCK 191
Query: 692 VEPGSNCAIFGLGAV 736
VE GS A++GLGAV
Sbjct: 192 VEEGSTVAVWGLGAV 206
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +1
Query: 127 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 255
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYT 45
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 121 bits (292), Expect = 5e-28
Identities = 52/84 (61%), Positives = 58/84 (69%)
Frame = +3
Query: 258 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 437
VCHTDAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C
Sbjct: 47 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYC 106
Query: 438 LNPKTNLCQKVRSTQGQGVMPDGT 509
NPKTNLCQK+R +QG G MPDG+
Sbjct: 107 KNPKTNLCQKIRISQGNGFMPDGS 130
Score = 120 bits (290), Expect = 8e-28
Identities = 53/75 (70%), Positives = 62/75 (82%)
Frame = +2
Query: 512 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 691
RF C G++L+HFMGCSTFS+YTVV +ISLCKV APL+KV LLGCG+ TGYGA LNT K
Sbjct: 132 RFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCK 191
Query: 692 VEPGSNCAIFGLGAV 736
VE GS A++GLGAV
Sbjct: 192 VEEGSTVAVWGLGAV 206
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +1
Query: 127 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITAT 255
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYT 45
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 121 bits (292), Expect = 5e-28
Identities = 52/84 (61%), Positives = 58/84 (69%)
Frame = +3
Query: 258 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 437
VCHTDAYTL G DPEG+FPVVL T PGDHVVPLYVPQC C++C
Sbjct: 49 VCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYC 108
Query: 438 LNPKTNLCQKVRSTQGQGVMPDGT 509
NPKTNLCQK+R +QG G MPDG+
Sbjct: 109 KNPKTNLCQKIRISQGNGFMPDGS 132
Score = 120 bits (290), Expect = 8e-28
Identities = 53/75 (70%), Positives = 62/75 (82%)
Frame = +2
Query: 512 RFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK 691
RF C G++L+HFMGCSTFS+YTVV +ISLCKV APL+KV LLGCG+ TGYGA LNT K
Sbjct: 134 RFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCK 193
Query: 692 VEPGSNCAIFGLGAV 736
VE GS A++GLGAV
Sbjct: 194 VEEGSTVAVWGLGAV 208
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = +1
Query: 127 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATESAI 267
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVK +A+
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKFQILYTAV 49
>Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical
protein K12G11.4 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 560 TFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFGLG 730
TF +Y + +I KV+ L + CG T Y +L V+PG + G G
Sbjct: 128 TFQEYLTIRDIDAIKVSNDTNLAAAAPVLCGGVTAY-KSLKATNVKPGQIVVLTGAG 183
>AC024755-1|AAF59637.2| 369|Caenorhabditis elegans Hypothetical
protein Y34B4A.7 protein.
Length = 369
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 287 GECIRVSMADSVAVILTRTSPAFGGSTS 204
G CI+VS+ D V VI T AF STS
Sbjct: 314 GSCIKVSITDEVNVIAICTKQAFTDSTS 341
>AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical
protein D2063.1 protein.
Length = 326
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 560 TFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFGLG 730
TF +Y + ++ K+ ++ + + CG T Y AL ++V+ G A+ G G
Sbjct: 128 TFQEYATIRDVDAIKIPKSMNMAAAAPVLCGGVTAY-KALKESEVKSGQIVAVTGAG 183
>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
protein Y57A10A.15 protein.
Length = 1072
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +3
Query: 489 GVMPDGTGDSAVKDR---NSTISWVVQHS 566
G +P+GT DSA DR S ++W+VQ S
Sbjct: 923 GKLPEGTPDSAYFDRKYKRSVMNWIVQSS 951
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,376,215
Number of Sequences: 27780
Number of extensions: 375123
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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