Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20786
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    87   3e-18
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   1.4  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.6  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   7.6  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   10.0 

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 44/79 (55%), Positives = 53/79 (67%)
 Frame = +3

Query: 3   ANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKED 182
           A+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW +L G SKED
Sbjct: 10  ADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKED 68

Query: 183 AQKAYIEIVEGLIASIGLK 239
           A   YI  V+ L    G+K
Sbjct: 69  AASEYISFVDELKTKYGMK 87


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 356 WRQKSLMRDDDAKNRAYLYSTLDNENYHVLASLKLSLLFFEADGSYETFDDLD 198
           W ++    +DD++    +Y+         LA   L  LF E    YE FDDL+
Sbjct: 355 WLRRVKFLEDDSEKVVQVYTDAIKNVNPKLAHGSLGKLFSEFARFYENFDDLE 407


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 368 HFCLKCFFFKNTNSY 412
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 36   DAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHKL-AGTSKEDAQKAYIE 203
            DA LLN+Y +F+Q  + V +A    +  L + +K +    +W        KE A+K++ E
Sbjct: 3316 DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKDTNVYALKESAKKSHAE 3375

Query: 204  IVEGL 218
            + + L
Sbjct: 3376 LFKVL 3380


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 344 SLMRDDDAKNRAYLYSTLDNENYHVLASLKLSLLFFEADG 225
           S  R D   +     +T ++E YH +A   ++ +F+E DG
Sbjct: 136 SFARSDPFISEEVRAATDEDEVYHFIAYTNINNVFYELDG 175


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 239 RIKDLISMMQEHDNFHYRVYYI 304
           +I  L+S   E D+F+YRVY I
Sbjct: 329 QISQLMSEDPESDDFYYRVYSI 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,312
Number of Sequences: 5004
Number of extensions: 51890
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)