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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20786
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    59   2e-09
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden...    45   4e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC...    42   4e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    33   0.13 
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    33   0.13 

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +3

Query: 9   VKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQ 188
           V  L  LP++  LL LY  +KQA  G  D  +RPG+  +K +AK+DAW  + G S E+A 
Sbjct: 14  VNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDAWKAVEGKSSEEAM 72

Query: 189 KAYIEIVEGLI 221
             YI  V+ L+
Sbjct: 73  NDYITKVKQLL 83


>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
           identical to acyl-CoA binding protein 2 [Arabidopsis
           thaliana] gi|12039034|gb|AAG46057
          Length = 354

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = +3

Query: 27  LPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIEI 206
           +P+D Q   LY  +K AT G    A +P  L +  +AK+ AW KL     E+A + YIEI
Sbjct: 127 VPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEI 184

Query: 207 VEGL 218
           V  L
Sbjct: 185 VTQL 188


>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
           putative similar to acyl-CoA binding protein 2
           [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 338

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +3

Query: 48  LNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 218
           L LY  +K AT G    A +P  L +  +AK+ AW KL     E+A + YI++V  L
Sbjct: 123 LQLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQL 178


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   ANVKN-LKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 179
           ++ KN +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L      
Sbjct: 30  SSAKNVISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTMPSI 87

Query: 180 DAQKAYIEIVE 212
           +A + +++I+E
Sbjct: 88  EAMRLFVKILE 98


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   ANVKN-LKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 179
           ++ KN +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L      
Sbjct: 30  SSAKNVISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTMPSI 87

Query: 180 DAQKAYIEIVE 212
           +A + +++I+E
Sbjct: 88  EAMRLFVKILE 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,476,079
Number of Sequences: 28952
Number of extensions: 255852
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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